CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63318	Soybean	plastid	98.41	98.41
VIT_17s0000g06350.t01	Wine grape	plastid	88.1	88.1
GSMUA_Achr2P14960_001	Banana	plastid	86.11	86.45
Bra018144.1-P	Field mustard	plastid	84.52	84.52
CDX99044	Canola	plastid	84.52	84.52
CDY47410	Canola	plastid	84.52	84.52
AT3G47470.1	Thale cress	plastid	83.73	84.06
Solyc06g069730.2.1	Tomato	plastid	82.94	83.6
PGSC0003DMT400083158	Potato	plastid	82.94	83.6
Zm00001d050403_P001	Maize	plastid	80.16	82.79
GSMUA_Achr4P24090_001	Banana	unclear	82.14	82.14
Zm00001d032197_P001	Maize	plastid	78.97	80.57
Os08t0435900-01	Rice	mitochondrion	77.78	80.33
KXG25214	Sorghum	plastid	79.37	79.68
HORVU5Hr1G066280.1	Barley	plastid	74.6	76.73
TraesCS5B01G227900.1	Wheat	plastid	74.6	76.73
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	74.6	76.73
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	74.21	76.33
KRH06319	Soybean	nucleus, plastid	48.41	45.19
KRH47742	Soybean	nucleus	46.43	41.49
KRH12566	Soybean	plastid	41.67	40.38
KRH37524	Soybean	plastid	41.67	40.38
KRH70044	Soybean	mitochondrion, nucleus, plastid	38.1	39.02
KRH08384	Soybean	nucleus, plastid	37.3	38.21
KRH68993	Soybean	plastid	46.03	37.66
KRH51989	Soybean	nucleus	42.46	37.54
KRH74072	Soybean	mitochondrion, nucleus, plastid	40.48	36.96
KRH14048	Soybean	nucleus, plastid	40.08	36.59
KRH08634	Soybean	endoplasmic reticulum	17.86	36.29
KRH10515	Soybean	mitochondrion, nucleus, plastid	33.33	32.31
KRH43915	Soybean	mitochondrion, nucleus, plastid	32.94	31.8
KRH58296	Soybean	plastid	30.56	31.69
KRH58441	Soybean	mitochondrion, plastid	32.54	31.18
KRH65776	Soybean	nucleus, plastid	35.71	31.03
KRH75874	Soybean	mitochondrion, nucleus, plastid	35.71	31.03
KRH42317	Soybean	mitochondrion, nucleus, plastid	32.14	30.8
KRH22164	Soybean	nucleus, plastid	32.54	30.71
KRH08669	Soybean	nucleus, plastid	32.14	30.68
KRH08672	Soybean	mitochondrion, nucleus, plastid	32.14	30.68
KRH08676	Soybean	nucleus, plastid	32.14	30.68
KRH27171	Soybean	mitochondrion, nucleus, plastid	32.54	30.6
KRH42185	Soybean	mitochondrion, nucleus, plastid	30.95	30.23
KRH61286	Soybean	mitochondrion	26.19	30.14
KRH70280	Soybean	plastid	29.37	29.72
KRG92462	Soybean	nucleus, plastid	33.33	29.17
KRH34336	Soybean	plastid	32.94	28.92
KRH09238	Soybean	mitochondrion, nucleus, plastid	32.94	28.72
KRH74003	Soybean	nucleus, plastid	30.16	28.68
KRH14122	Soybean	nucleus, plastid	30.16	28.68
KRH38736	Soybean	nucleus, plastid	32.94	28.52
KRG97750	Soybean	plastid	30.95	28.06
KRH31130	Soybean	nucleus, plastid	30.95	27.66
KRH06016	Soybean	plastid	32.14	24.4
KRH17548	Soybean	cytosol, peroxisome, plastid	18.25	22.77
KRH58809	Soybean	mitochondrion	22.62	17.98

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	EntrezGene:100798548	UniProt:A0A0R0JQ91	EMBL:ACUP02003542	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_06G194900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941
GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlants:KRH54568	ProteinID:KRH54568
ProteinID:KRH54568.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	UniParc:UPI00020819F1

Description

hypothetical protein

Coordinates

chr6:-:17418192..17420571

Molecular Weight (calculated)

27957.5 Da

IEP (calculated)

7.551

GRAVY (calculated)

-0.162

Length

252 amino acids

Sequence
(BLAST)

001: MATVTTQASA AIFRPCASKS RFLTGSSGKL NREVTMRPMG CPPSASFKVE AKKGEWLPGL ASPTYLNGTL PGDNGFDPLG LAEDPENLRW YVQAELVNGR
101: WAMLGVAGML LPEVFTKIGI INAPQWYDAG KSEYFASSST LFVIEFILFH YVEIRRWQDI KNPGSVNQDP IFKQYSLPQH ECGYPGSVFN PLNFAPTLEA
201: KEKELANGRL AMLAFLGFIV QHNVTGKGPF ENLLQHLSDP WHNTIINTIR GY

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.