CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34336	Soybean	plastid	96.88	97.21
KRH38736	Soybean	nucleus, plastid	92.36	91.41
KRH09238	Soybean	mitochondrion, nucleus, plastid	91.67	91.35
GSMUA_Achr6P12670_001	Banana	plasma membrane	80.9	83.51
GSMUA_Achr3P02780_001	Banana	plastid	83.68	83.1
GSMUA_Achr10P...	Banana	plastid	82.99	82.99
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	89.58	64.18
KRH58809	Soybean	mitochondrion	51.74	47.0
KRH08672	Soybean	mitochondrion, nucleus, plastid	40.97	44.7
KRH08676	Soybean	nucleus, plastid	40.97	44.7
KRH42317	Soybean	mitochondrion, nucleus, plastid	40.62	44.49
KRH08634	Soybean	endoplasmic reticulum	19.1	44.35
KRH08669	Soybean	nucleus, plastid	40.62	44.32
KRH58441	Soybean	mitochondrion, plastid	39.93	43.73
KRH14122	Soybean	nucleus, plastid	38.89	42.26
KRH22164	Soybean	nucleus, plastid	38.89	41.95
KRH74003	Soybean	nucleus, plastid	38.19	41.51
KRH27171	Soybean	mitochondrion, nucleus, plastid	38.54	41.42
KRH70280	Soybean	plastid	34.03	39.36
KRH12566	Soybean	plastid	30.9	34.23
KRH08384	Soybean	nucleus, plastid	29.17	34.15
KRH70044	Soybean	mitochondrion, nucleus, plastid	28.82	33.74
KRH17548	Soybean	cytosol, peroxisome, plastid	23.61	33.66
KRH63318	Soybean	plastid	29.17	33.33
KRH54568	Soybean	nucleus, plastid	29.17	33.33
KRH37524	Soybean	plastid	29.86	33.08
KRH06016	Soybean	plastid	37.85	32.83
KRH14048	Soybean	nucleus, plastid	31.25	32.61
KRH74072	Soybean	mitochondrion, nucleus, plastid	31.25	32.61
KRH06319	Soybean	nucleus, plastid	29.86	31.85
KRH47742	Soybean	nucleus	28.82	29.43
KRH75874	Soybean	mitochondrion, nucleus, plastid	29.51	29.31
KRH65776	Soybean	nucleus, plastid	29.51	29.31
KRH58296	Soybean	plastid	23.96	28.4
KRG97750	Soybean	plastid	26.74	27.7
KRH42185	Soybean	mitochondrion, nucleus, plastid	24.65	27.52
KRH51989	Soybean	nucleus	27.08	27.37
KRH31130	Soybean	nucleus, plastid	26.74	27.3
KRH68993	Soybean	plastid	29.17	27.27
KRH43915	Soybean	mitochondrion, nucleus, plastid	24.31	26.82
KRH10515	Soybean	mitochondrion, nucleus, plastid	23.96	26.54
KRH61286	Soybean	mitochondrion	12.85	16.89

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	EntrezGene:100817348	UniProt:A0A0R0ERF9	EMBL:ACUP02012759	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_20G212900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941
GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlants:KRG92462	ProteinID:KRG92462
ProteinID:KRG92462.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	UniParc:UPI000233DC4E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:44948853..44951787

Molecular Weight (calculated)

30897.4 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.013

Length

288 amino acids

Sequence
(BLAST)

001: MASLAASTAA MSEMLGNPVS LRGATRSAPS PSTPVTFKTV ALFSKKKAAP PPPKKKPAAV SPANEELAKW YGPDRRIFLP EGLLDRSEIP EYLTGEVPGD
101: YGYDPFGLSK KPEDFAKYQA FELIHARWAM LGAAGFIIPE AFNKYGANCG PEAVWFKTGA LLLDGGTLNY FGKPIPINLI VAVVAEIVLV GGAEYYRIIN
201: GLDLEDKLHP GGPFDPLGLA KDPDQAALLK VKEIKNGRLA MFAMLGFYFQ AYVTGEGPVE NLAKHLSDPF GNNLLTVIAG SVERAPTL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.