CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037285	Potato	extracellular, vacuole	55.56	96.15
Solyc10g006230.2.1	Tomato	plastid	89.26	89.26
KRH47742	Soybean	nucleus	92.59	88.65
VIT_01s0010g03620.t01	Wine grape	plastid	86.3	85.98
CDY43936	Canola	plastid	80.74	85.16
Bra014433.1-P	Field mustard	plastid	80.0	84.38
CDX89120	Canola	plastid	80.0	84.38
AT3G61470.1	Thale cress	plastid	79.63	83.66
TraesCS2D01G200700.1	Wheat	plastid	78.89	83.53
Os07t0577600-01	Rice	plastid	81.11	83.27
TraesCS2B01G220100.1	Wheat	golgi, plastid	78.52	83.14
Bra003451.1-P	Field mustard	plastid	79.26	82.63
TraesCS2A01G187200.1	Wheat	plastid	78.52	82.49
CDY51572	Canola	plastid	78.89	82.24
KXG36552	Sorghum	plastid	79.63	81.75
Zm00001d006663_P001	Maize	plastid	78.52	81.54
GSMUA_Achr6P20660_001	Banana	mitochondrion	61.85	81.46
Zm00001d021906_P001	Maize	plastid	79.26	79.26
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	70.74	76.71
KRH68993	Soybean	plastid	87.41	76.62
HORVU2Hr1G036960.4	Barley	plastid	77.04	73.76
AT5G28450.1	Thale cress	plastid	41.85	65.32
KRH12566	Soybean	plastid	56.3	58.46
KRH37524	Soybean	plastid	56.3	58.46
KRH63318	Soybean	plastid	45.19	48.41
KRH54568	Soybean	nucleus, plastid	45.19	48.41
KRH70044	Soybean	mitochondrion, nucleus, plastid	35.56	39.02
KRH08384	Soybean	nucleus, plastid	35.56	39.02
KRH74072	Soybean	mitochondrion, nucleus, plastid	39.63	38.77
KRH14048	Soybean	nucleus, plastid	39.63	38.77
KRH08634	Soybean	endoplasmic reticulum	17.78	38.71
KRH51989	Soybean	nucleus	40.0	37.89
KRH08669	Soybean	nucleus, plastid	32.96	33.71
KRH58441	Soybean	mitochondrion, plastid	32.59	33.46
KRH08672	Soybean	mitochondrion, nucleus, plastid	32.59	33.33
KRH08676	Soybean	nucleus, plastid	32.59	33.33
KRH42317	Soybean	mitochondrion, nucleus, plastid	32.22	33.08
KRH58296	Soybean	plastid	29.63	32.92
KRH42185	Soybean	mitochondrion, nucleus, plastid	30.37	31.78
KRH70280	Soybean	plastid	29.26	31.73
KRH10515	Soybean	mitochondrion, nucleus, plastid	30.37	31.54
KRH61286	Soybean	mitochondrion	25.56	31.51
KRH43915	Soybean	mitochondrion, nucleus, plastid	30.37	31.42
KRH74003	Soybean	nucleus, plastid	30.74	31.32
KRH14122	Soybean	nucleus, plastid	30.37	30.94
KRG97750	Soybean	plastid	31.48	30.58
KRH09238	Soybean	mitochondrion, nucleus, plastid	32.59	30.45
KRH75874	Soybean	mitochondrion, nucleus, plastid	32.59	30.34
KRH65776	Soybean	nucleus, plastid	32.59	30.34
KRH38736	Soybean	nucleus, plastid	32.59	30.24
KRH31130	Soybean	nucleus, plastid	31.48	30.14
KRH34336	Soybean	plastid	31.85	29.97
KRH22164	Soybean	nucleus, plastid	29.63	29.96
KRG92462	Soybean	nucleus, plastid	31.85	29.86
KRH27171	Soybean	mitochondrion, nucleus, plastid	29.63	29.85
KRH06016	Soybean	plastid	31.11	25.3
KRH17548	Soybean	cytosol, peroxisome, plastid	18.15	24.26
KRH58809	Soybean	mitochondrion	21.48	18.3

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	EntrezGene:100802138	EMBL:ACUP02009825	EMBL:BT098118	UniProt:C6TKB2
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_16G016100	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlants:KRH06319
ProteinID:KRH06319	ProteinID:KRH06319.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF57	SUPFAM:SSF103511
UniParc:UPI0001B16B28	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:1404906..1407307

Molecular Weight (calculated)

29040.7 Da

IEP (calculated)

6.510

GRAVY (calculated)

0.036

Length

270 amino acids

Sequence
(BLAST)

001: MASSCASSAI AAVAISTPSS QKNGSLLGST KASFLSGRKL KVNNFTAPVG ARSSTTVCAV AEPDRPLWFP GSTPPPWLDG SLPGDFGFDP LGLASDPESL
101: RWNVQAELVH CRWAMLGAAG IFIPEFLTKI GILNTPSWYT AGELEYFTDT TTLFIVELFF IGWAEGRRWA DIIKPGCVNT DPIFPNNKLT GTDVGYPGGL
201: WFDPLGWGSG SPEKIKELRT KEIKNGRLAM LAVMGAWFQH IYTGTGPIDN LFAHLADPGH ATIFAAFTPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.