CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 2
plasma membrane 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61286	Soybean	mitochondrion	57.19	74.43
VIT_18s0001g10550.t01	Wine grape	plastid	67.72	73.11
AT1G45474.2	Thale cress	mitochondrion	64.91	72.27
Solyc07g022900.2.1	Tomato	plastid	66.32	72.14
Bra014048.1-P	Field mustard	mitochondrion, plastid	63.86	70.54
CDY43213	Canola	mitochondrion, plastid	63.86	70.54
CDY17055	Canola	mitochondrion, plastid	63.51	70.16
EES07574	Sorghum	plastid	61.75	66.17
Os02t0764500-01	Rice	plastid	60.0	65.52
TraesCS6B01G350500.1	Wheat	plastid	58.95	65.37
TraesCS6D01G299200.1	Wheat	plastid	57.89	64.96
TraesCS6A01G319700.1	Wheat	plastid	57.89	64.96
GSMUA_Achr7P13020_001	Banana	plastid	61.4	64.34
Zm00001d018157_P001	Maize	plastid	60.35	63.94
PGSC0003DMT400011381	Potato	plastid	55.09	59.02
TraesCS6B01G312900.1	Wheat	plastid	27.72	54.48
KRH54568	Soybean	nucleus, plastid	37.54	42.46
KRH63318	Soybean	plastid	37.19	42.06
KRH06319	Soybean	nucleus, plastid	37.89	40.0
KRH12566	Soybean	plastid	36.14	39.62
KRH37524	Soybean	plastid	35.79	39.23
KRH74072	Soybean	mitochondrion, nucleus, plastid	35.79	36.96
KRH14048	Soybean	nucleus, plastid	35.79	36.96
KRH47742	Soybean	nucleus	36.14	36.52
KRH08634	Soybean	endoplasmic reticulum	15.79	36.29
KRH43915	Soybean	mitochondrion, nucleus, plastid	32.98	36.02
KRH58296	Soybean	plastid	30.53	35.8
KRH10515	Soybean	mitochondrion, nucleus, plastid	32.28	35.38
KRH68993	Soybean	plastid	37.54	34.74
KRH08384	Soybean	nucleus, plastid	29.47	34.15
KRH42185	Soybean	mitochondrion, nucleus, plastid	30.88	34.11
KRH70044	Soybean	mitochondrion, nucleus, plastid	29.12	33.74
KRH14122	Soybean	nucleus, plastid	28.07	30.19
KRH22164	Soybean	nucleus, plastid	28.07	29.96
KRH08672	Soybean	mitochondrion, nucleus, plastid	27.72	29.92
KRH08676	Soybean	nucleus, plastid	27.72	29.92
KRH08669	Soybean	nucleus, plastid	27.72	29.92
KRH74003	Soybean	nucleus, plastid	27.72	29.81
KRH70280	Soybean	plastid	25.96	29.72
KRH58441	Soybean	mitochondrion, plastid	27.37	29.66
KRH42317	Soybean	mitochondrion, nucleus, plastid	27.37	29.66
KRH27171	Soybean	mitochondrion, nucleus, plastid	27.72	29.48
KRH75874	Soybean	mitochondrion, nucleus, plastid	29.47	28.97
KRH65776	Soybean	nucleus, plastid	29.12	28.62
KRH34336	Soybean	plastid	27.37	27.18
KRG92462	Soybean	nucleus, plastid	27.37	27.08
KRG97750	Soybean	plastid	25.96	26.62
KRH09238	Soybean	mitochondrion, nucleus, plastid	26.67	26.3
KRH38736	Soybean	nucleus, plastid	26.67	26.12
KRH31130	Soybean	nucleus, plastid	25.26	25.53
KRH06016	Soybean	plastid	27.02	23.19
KRH17548	Soybean	cytosol, peroxisome, plastid	14.74	20.79
KRH58809	Soybean	mitochondrion	21.4	19.24

Protein Annotations

MapMan:1.1.4.1.5	Gene3D:1.10.3460.10	EntrezGene:100804934	EMBL:ACUP02003402	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_06G039700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	UniProt:I1K7Z5	InterPro:IPR023329	EnsemblPlants:KRH51989	ProteinID:KRH51989
ProteinID:KRH51989.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23	SUPFAM:SSF103511	UniParc:UPI000295B4EE
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:3001090..3003031

Molecular Weight (calculated)

30769.2 Da

IEP (calculated)

8.243

GRAVY (calculated)

0.048

Length

285 amino acids

Sequence
(BLAST)

001: MHVVVVKEAN LSTGIGADNQ KTMAVAIGRS FSIQPGSLFN NKSLDRGSPA GRLSWLGDGA AATPRYRQTC VGAQQRPTWL PGLDPPPHLD GTLAGDFGFD
101: PLGLAEDPAS LRWYVQAELV HCRFAMLGVF GILVTDLLRV TGISKIPVWF EAGAVKYDFA NTKTLFLVQL VLMGFVETKR YMDFVSPGSQ AKEGSFFGLE
201: ASLKGLEPGY PGGPLLNPLG LAKDINNAHD WKLKEIKNGR LAMVAMLGIF VQASVTHVGP IDNLVEHLSN PWHKTIIQTL ANSSS

Best Arabidopsis Sequence Match ( AT1G45474.2 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.