Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G350500.1 | Wheat | plastid | 87.59 | 49.42 |
| Os02t0764500-01 | Rice | plastid | 77.93 | 43.3 |
| EES07574 | Sorghum | plastid | 71.72 | 39.1 |
| Zm00001d018157_P001 | Maize | plastid | 72.41 | 39.03 |
| KRH61286 | Soybean | mitochondrion | 48.28 | 31.96 |
| PGSC0003DMT400011381 | Potato | plastid | 57.24 | 31.2 |
| Solyc07g022900.2.1 | Tomato | plastid | 55.86 | 30.92 |
| GSMUA_Achr7P13020_001 | Banana | plastid | 57.93 | 30.88 |
| VIT_18s0001g10550.t01 | Wine grape | plastid | 55.86 | 30.68 |
| AT1G45474.2 | Thale cress | mitochondrion | 53.79 | 30.47 |
| Bra014048.1-P | Field mustard | mitochondrion, plastid | 53.79 | 30.23 |
| CDY17055 | Canola | mitochondrion, plastid | 53.79 | 30.23 |
| CDY43213 | Canola | mitochondrion, plastid | 53.79 | 30.23 |
| KRH51989 | Soybean | nucleus | 54.48 | 27.72 |
| TraesCS2B01G220100.1 | Wheat | golgi, plastid | 42.76 | 24.31 |
| TraesCS5B01G227900.1 | Wheat | plastid | 37.93 | 22.45 |
| TraesCS2B01G340300.1 | Wheat | plastid | 37.24 | 21.18 |
| TraesCS5B01G462900.1 | Wheat | plastid | 28.97 | 20.59 |
| TraesCS5B01G210800.2 | Wheat | cytosol, plastid | 31.72 | 19.33 |
| TraesCS6B01G191500.1 | Wheat | plastid | 32.41 | 17.47 |
| TraesCS6B01G122600.1 | Wheat | plastid | 29.66 | 16.17 |
| TraesCS1B01G432700.1 | Wheat | plastid | 28.97 | 15.79 |
| TraesCS5B01G462800.1 | Wheat | plastid | 28.97 | 15.79 |
| TraesCS6B01G122700.1 | Wheat | mitochondrion, plastid | 22.76 | 15.57 |
| TraesCS7B01G192500.1 | Wheat | plastid | 26.21 | 15.51 |
| TraesCS1B01G388300.1 | Wheat | plastid | 28.28 | 15.47 |
| TraesCS7B01G103300.1 | Wheat | plastid | 28.28 | 15.41 |
| TraesCS1B01G433300.1 | Wheat | plastid | 28.28 | 15.41 |
| TraesCS6B01G122800.1 | Wheat | plastid | 28.28 | 15.41 |
| TraesCS5B01G463000.1 | Wheat | plastid | 28.28 | 15.41 |
| TraesCS5B01G463100.1 | Wheat | plastid | 28.28 | 15.41 |
| TraesCS5B01G322900.1 | Wheat | plastid | 27.59 | 15.21 |
| TraesCS5B01G353200.1 | Wheat | plastid | 27.59 | 15.09 |
| TraesCS1B01G388500.1 | Wheat | plastid | 27.59 | 15.09 |
| TraesCS1B01G388200.1 | Wheat | plastid | 27.59 | 15.09 |
| TraesCS7B01G103400.1 | Wheat | plastid | 27.59 | 15.04 |
| TraesCS2B01G233400.1 | Wheat | plastid | 29.66 | 15.04 |
| TraesCS1B01G451100.1 | Wheat | plastid | 26.9 | 14.55 |
| TraesCS4B01G089500.1 | Wheat | mitochondrion, plastid | 26.9 | 13.64 |
| TraesCS5B01G175000.1 | Wheat | plastid | 26.9 | 12.62 |
| TraesCS6B01G122500.1 | Wheat | cytosol, extracellular, plastid | 8.97 | 8.12 |
| TraesCS1B01G317500.1 | Wheat | plastid | 5.52 | 5.23 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G312900.1 | EnsemblPlantsGene:TraesCS6B01G312900 | Gene3D:1.10.3460.10 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | InterPro:IPR023329 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF23 | PFAM:PF00504 |
| SEG:seg | SUPFAM:SSF103511 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:560624873..560625907
Molecular Weight (calculated)
15489.7 Da
IEP (calculated)
8.237
GRAVY (calculated)
0.198
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAANTHGR VCTLSSRPPT PFSRSTTTMP GHNVQSSRAR FAVRATAERW LSGLDLPAYL DGTLPGDYGF GPLGLGEQPE ALKWYVQAEL VHCRFAMAGV
101: AGILGTNLIS VSGIGNLPVW FEAGAAKFDF ANTTTLFFVQ LLLMG
101: AGILGTNLIS VSGIGNLPVW FEAGAAKFDF ANTTTLFFVQ LLLMG
001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS
Arabidopsis Description
LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.