Factsheet for TraesCS6B01G122600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G122700.1	Wheat	mitochondrion, plastid	74.81	93.87
TraesCS1B01G388200.1	Wheat	plastid	93.23	93.58
TraesCS1B01G388300.1	Wheat	plastid	92.48	92.83
TraesCS6B01G122500.1	Wheat	cytosol, extracellular, plastid	55.64	92.5
TraesCS6B01G122800.1	Wheat	plastid	92.48	92.48
TraesCS1B01G433300.1	Wheat	plastid	92.48	92.48
TraesCS1B01G388500.1	Wheat	plastid	91.73	92.08
TraesCS5B01G463000.1	Wheat	plastid	91.73	91.73
TraesCS5B01G463100.1	Wheat	plastid	91.73	91.73
TraesCS1B01G432700.1	Wheat	plastid	91.73	91.73
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	45.86	91.73
TraesCS7B01G103300.1	Wheat	plastid	91.35	91.35
TraesCS5B01G462800.1	Wheat	plastid	90.98	90.98
TraesCS7B01G103400.1	Wheat	plastid	90.6	90.6
TraesCS1B01G317500.1	Wheat	plastid	51.13	88.89
TraesCS5B01G462900.1	Wheat	plastid	68.05	88.73
TraesCS5B01G353200.1	Wheat	plastid	85.71	86.04
HORVU1Hr1G088920.3	Barley	plastid	94.36	84.8
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	84.96	84.64
VIT_19s0014g00160.t01	Wine grape	plastid	84.96	84.64
VIT_10s0003g02900.t01	Wine grape	plastid	83.46	84.09
VIT_10s0003g02890.t01	Wine grape	plastid	83.08	83.71
VIT_12s0028g00320.t01	Wine grape	plastid	83.46	82.22
VIT_07s0005g02220.t01	Wine grape	plastid	80.83	81.75
PGSC0003DMT400034902	Potato	plastid	39.47	80.15
GSMUA_Achr4P07890_001	Banana	plastid	46.24	77.36
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	94.74	77.06
TraesCS5B01G322900.1	Wheat	plastid	70.68	71.48
TraesCS1B01G451100.1	Wheat	plastid	65.79	65.3
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	43.98	40.91
TraesCS6B01G350500.1	Wheat	plastid	35.34	36.58
TraesCS5B01G175000.1	Wheat	plastid	42.48	36.57
TraesCS7B01G192500.1	Wheat	plastid	33.46	36.33
TraesCS2B01G220100.1	Wheat	golgi, plastid	33.46	34.9
TraesCS5B01G210800.2	Wheat	cytosol, plastid	30.45	34.03
TraesCS6B01G191500.1	Wheat	plastid	31.58	31.23
TraesCS2B01G233400.1	Wheat	plastid	33.08	30.77
TraesCS5B01G227900.1	Wheat	plastid	27.82	30.2
TraesCS2B01G340300.1	Wheat	plastid	28.57	29.8
TraesCS6B01G312900.1	Wheat	plastid	16.17	29.66

Protein Annotations

EnsemblPlants:TraesCS6B01G122600.1	EnsemblPlantsGene:TraesCS6B01G122600	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:

Description

No Description!

Coordinates

chr6B:+:117751189..117807204

Molecular Weight (calculated)

28449.1 Da

IEP (calculated)

5.298

GRAVY (calculated)

0.103

Length

266 amino acids

Sequence
(BLAST)

001: MATTTMSLSS SSFASKMVKN IPSSALFGEA HVTMCKIAAK AKQVSSHSPW YGADRVLYLG PLSGEPPSYL TGEFPGDYGW DIAGLSSDPE TFSKNRELEV
101: IHCRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS EGGLDYLGNP SLVHAQSILA VWACQVVLMG AVEGYRVAGG PLGEIVDPLY PGGSFNPLGL
201: ADDPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLTDHISDP VNNNAWAFAT NFVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.