Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G182000.1 | Wheat | plastid | 98.06 | 97.74 |
| TraesCS5A01G177700.1 | Wheat | plastid | 96.76 | 96.45 |
| HORVU5Hr1G054000.1 | Barley | mitochondrion, plastid | 96.44 | 96.13 |
| EER96508 | Sorghum | plastid | 86.73 | 85.35 |
| Zm00001d020002_P002 | Maize | plastid | 86.41 | 84.76 |
| Os09t0296800-01 | Rice | plastid | 88.03 | 84.74 |
| PGSC0003DMT400025715 | Potato | plastid | 70.87 | 68.87 |
| GSMUA_Achr9P27480_001 | Banana | mitochondrion | 71.2 | 68.32 |
| Bra008265.1-P | Field mustard | plastid | 71.52 | 68.21 |
| CDY45980 | Canola | plastid | 71.2 | 67.9 |
| VIT_18s0122g00430.t01 | Wine grape | plastid | 71.84 | 67.07 |
| CDY20401 | Canola | plastid | 70.87 | 66.97 |
| AT1G76570.1 | Thale cress | plastid | 69.9 | 66.06 |
| KRH06016 | Soybean | plastid | 69.9 | 65.06 |
| Solyc04g082920.2.1 | Tomato | plastid | 43.04 | 61.01 |
| KRH17548 | Soybean | cytosol, peroxisome, plastid | 33.66 | 51.49 |
| TraesCS6B01G122500.1 | Wheat | cytosol, extracellular, plastid | 25.57 | 49.38 |
| TraesCS6B01G122700.1 | Wheat | mitochondrion, plastid | 32.36 | 47.17 |
| TraesCS5B01G353200.1 | Wheat | plastid | 38.19 | 44.53 |
| TraesCS1B01G388300.1 | Wheat | plastid | 37.86 | 44.15 |
| TraesCS5B01G463000.1 | Wheat | plastid | 37.86 | 43.98 |
| TraesCS5B01G462800.1 | Wheat | plastid | 37.86 | 43.98 |
| TraesCS1B01G317500.1 | Wheat | plastid | 21.68 | 43.79 |
| TraesCS1B01G432700.1 | Wheat | plastid | 37.54 | 43.61 |
| TraesCS7B01G103300.1 | Wheat | plastid | 37.54 | 43.61 |
| TraesCS5B01G463100.1 | Wheat | plastid | 37.54 | 43.61 |
| TraesCS1B01G388500.1 | Wheat | plastid | 37.22 | 43.4 |
| TraesCS1B01G388200.1 | Wheat | plastid | 37.22 | 43.4 |
| TraesCS7B01G103400.1 | Wheat | plastid | 37.22 | 43.23 |
| TraesCS6B01G122800.1 | Wheat | plastid | 36.89 | 42.86 |
| TraesCS1B01G433300.1 | Wheat | plastid | 36.57 | 42.48 |
| TraesCS6B01G122600.1 | Wheat | plastid | 36.57 | 42.48 |
| TraesCS5B01G322900.1 | Wheat | plastid | 35.6 | 41.83 |
| TraesCS1B01G451100.1 | Wheat | plastid | 36.25 | 41.79 |
| TraesCS7B01G192500.1 | Wheat | plastid | 31.07 | 39.18 |
| TraesCS5B01G462900.1 | Wheat | plastid | 25.24 | 38.24 |
| TraesCS4B01G089500.1 | Wheat | mitochondrion, plastid | 33.33 | 36.01 |
| TraesCS2B01G220100.1 | Wheat | golgi, plastid | 27.51 | 33.33 |
| TraesCS6B01G350500.1 | Wheat | plastid | 27.18 | 32.68 |
| TraesCS5B01G210800.2 | Wheat | cytosol, plastid | 24.92 | 32.35 |
| TraesCS2B01G233400.1 | Wheat | plastid | 27.83 | 30.07 |
| TraesCS6B01G191500.1 | Wheat | plastid | 25.57 | 29.37 |
| TraesCS5B01G227900.1 | Wheat | plastid | 22.33 | 28.16 |
| TraesCS2B01G340300.1 | Wheat | plastid | 22.33 | 27.06 |
| TraesCS6B01G312900.1 | Wheat | plastid | 12.62 | 26.9 |
Protein Annotations
| MapMan:1.1.1.1.5 | Gene3D:1.10.3460.10 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009637 |
| GO:GO:0009765 | GO:GO:0009987 | GO:GO:0010218 | GO:GO:0015979 | GO:GO:0016020 | InterPro:IPR023329 |
| PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF24 | SUPFAM:SSF103511 | EnsemblPlantsGene:TraesCS5B01G175000 | EnsemblPlants:TraesCS5B01G175000.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:321214744..321217821
Molecular Weight (calculated)
33840.2 Da
IEP (calculated)
9.048
GRAVY (calculated)
0.161
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPLLRSPAP PSAGVFCRRR KRMRARASWQ ELAGVLVFSA VPFTAVKAIA NSPLGASLRR RLESRKASAA AEADALRAAA REARSSSFWY GGARPRWLGP
101: LRYDYPEHLV GEFPGDYGFD IAGLGRDPVA FANYFNFEIL HCRWAMLAAL GVVVPELLDL FGIVHFVEPV WWKVGYAKLQ GDTLDYLGIP GFRIAGGQGI
201: IVIAICQVLL MVGPEYARYC GIEALEPLGI YLPGDINYPG GALFDPLGLS KDPVAFEELK VKEIKNGRLA MVAWIGFYAQ AAVTGKGPVQ NLVEHLSDPL
301: RNNVLSHFL
101: LRYDYPEHLV GEFPGDYGFD IAGLGRDPVA FANYFNFEIL HCRWAMLAAL GVVVPELLDL FGIVHFVEPV WWKVGYAKLQ GDTLDYLGIP GFRIAGGQGI
201: IVIAICQVLL MVGPEYARYC GIEALEPLGI YLPGDINYPG GALFDPLGLS KDPVAFEELK VKEIKNGRLA MVAWIGFYAQ AAVTGKGPVQ NLVEHLSDPL
301: RNNVLSHFL
001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT
Arabidopsis Description
LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.