Factsheet for VIT_18s0122g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
peroxisome 1
extracellular 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025715	Potato	plastid	76.13	79.25
KRH06016	Soybean	plastid	79.15	78.92
Bra008265.1-P	Field mustard	plastid	75.83	77.47
CDY45980	Canola	plastid	75.23	76.85
CDY20401	Canola	plastid	75.23	76.15
AT1G76570.1	Thale cress	plastid	75.23	76.15
Solyc04g082920.2.1	Tomato	plastid	49.55	75.23
EER96508	Sorghum	plastid	68.88	72.61
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	67.67	72.26
TraesCS5A01G177700.1	Wheat	plastid	67.37	71.94
TraesCS5B01G175000.1	Wheat	plastid	67.07	71.84
TraesCS5D01G182000.1	Wheat	plastid	67.07	71.61
Zm00001d020002_P002	Maize	plastid	67.98	71.43
GSMUA_Achr9P27480_001	Banana	mitochondrion	69.49	71.43
Os09t0296800-01	Rice	plastid	67.67	69.78
KRH17548	Soybean	cytosol, peroxisome, plastid	35.05	57.43
VIT_10s0003g02900.t01	Wine grape	plastid	35.65	44.7
VIT_10s0003g02890.t01	Wine grape	plastid	35.35	44.32
VIT_07s0005g02220.t01	Wine grape	plastid	35.05	44.11
VIT_19s0014g00160.t01	Wine grape	plastid	34.74	43.07
VIT_12s0057g00630.t01	Wine grape	plastid	34.14	42.64
VIT_12s0028g00320.t01	Wine grape	plastid	34.74	42.59
VIT_19s0014g03660.t01	Wine grape	plastid	33.23	41.35
VIT_00s0181g00180.t01	Wine grape	plastid	33.23	40.89
VIT_00s0181g00200.t01	Wine grape	plastid	33.23	40.89
VIT_13s0019g04140.t01	Wine grape	plastid	27.49	37.3
VIT_17s0000g06350.t01	Wine grape	plastid	25.68	33.73
VIT_11s0016g00730.t01	Wine grape	plastid	26.28	33.59
VIT_01s0010g03620.t01	Wine grape	plastid	26.89	32.84
VIT_15s0024g00040.t01	Wine grape	plastid	26.59	32.12
VIT_12s0055g01110.t01	Wine grape	plastid	23.57	30.35
VIT_18s0001g10550.t01	Wine grape	plastid	23.87	29.92
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	33.23	27.36
VIT_08s0007g02190.t01	Wine grape	plastid	26.89	26.02

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	EntrezGene:100256544	wikigene:100256544	ProteinID:CBI40786	ProteinID:CBI40786.3
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	UniProt:D7UDH1	EMBL:FN596759	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010218	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100256544	wikigene:LOC100256544	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF24	SUPFAM:SSF103511	UniParc:UPI00015CC683	ArrayExpress:VIT_18s0122g00430	EnsemblPlantsGene:VIT_18s0122g00430	EnsemblPlants:VIT_18s0122g00430.t01
unigene:Vvi.21526	RefSeq:XP_002276647	RefSeq:XP_002276647.1	SEG:seg	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:D7UDH1]

Coordinates

chr18:-:381788..387241

Molecular Weight (calculated)

36395.9 Da

IEP (calculated)

8.181

GRAVY (calculated)

0.028

Length

331 amino acids

Sequence
(BLAST)

001: MALRQPCSVS SSSSSFFGGY RHRLCSKISW PKSRNVNSTS TYSGCKASWQ ELAGVLIFSA IPFTAVKAIA NSPLGESLQS RMEENKKAAV KNSSKFKALA
101: EKAKNESLWY GEERPRWLGP IPYDYPAYLT GELPGDYGFD IAGLGKDPVA FQKYFNFEIL HARWAMLAAL GALLPELLDL LGAFHFVEPV WWRVGYSKLK
201: GDTLDYLGIP GFHFAGSQGV IVIAICQALL MVGPEYARYC GIEALEPLGI YLPGDINYPG GALFDPLNLS KDPVAFEELK VKEIKNGRLA MVAWLGFYIQ
301: AAATGKGPVQ NLLDHLADPF HNNLLSIFKA L

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.