Factsheet for TraesCS5A01G177700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G182000.1	Wheat	plastid	96.77	96.77
TraesCS5B01G175000.1	Wheat	plastid	96.45	96.76
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	96.45	96.45
EER96508	Sorghum	plastid	87.42	86.31
Zm00001d020002_P002	Maize	plastid	87.42	86.03
Os09t0296800-01	Rice	plastid	88.39	85.36
GSMUA_Achr9P27480_001	Banana	mitochondrion	71.94	69.25
Bra008265.1-P	Field mustard	plastid	71.94	68.83
PGSC0003DMT400025715	Potato	plastid	70.32	68.55
CDY45980	Canola	plastid	71.61	68.52
CDY20401	Canola	plastid	71.29	67.58
VIT_18s0122g00430.t01	Wine grape	plastid	71.94	67.37
AT1G76570.1	Thale cress	plastid	69.35	65.75
KRH06016	Soybean	plastid	70.32	65.66
Solyc04g082920.2.1	Tomato	plastid	43.23	61.47
KRH17548	Soybean	cytosol, peroxisome, plastid	33.55	51.49
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	25.48	47.31
TraesCS7A01G276400.1	Wheat	plastid	37.42	44.62
TraesCS1A01G306600.1	Wheat	plastid	37.74	44.15
TraesCS5A01G350600.1	Wheat	plastid	37.74	44.15
TraesCS6A01G094600.1	Wheat	plastid	36.13	43.75
TraesCS7A01G238400.1	Wheat	plastid	37.1	43.23
TraesCS1A01G403300.1	Wheat	plastid	37.1	43.23
TraesCS5A01G454300.1	Wheat	plastid	36.77	42.86
TraesCS6A01G093700.1	Wheat	plastid	36.45	42.48
TraesCS6A01G094300.1	Wheat	plastid	36.45	42.48
TraesCS6A01G094100.1	Wheat	plastid	36.45	42.48
TraesCS5A01G454200.1	Wheat	plastid	36.45	42.48
TraesCS1A01G403800.1	Wheat	plastid	36.13	42.11
TraesCS7A01G237100.1	Wheat	plastid	35.81	41.73
TraesCS5A01G322500.1	Wheat	plastid	35.16	41.44
TraesCS2A01G204800.1	Wheat	plastid	35.16	40.67
TraesCS7A01G227100.1	Wheat	plastid	31.29	39.27
TraesCS6A01G094500.1	Wheat	plastid	36.77	37.38
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	32.9	35.42
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	36.45	34.56
TraesCS6A01G094400.1	Wheat	plastid	37.1	34.53
TraesCS2A01G187200.1	Wheat	plastid	28.06	33.85
TraesCS6A01G319700.1	Wheat	plastid	27.1	33.07
TraesCS6A01G159800.1	Wheat	plastid	25.81	29.74
TraesCS2A01G206200.1	Wheat	plastid	27.42	29.72
TraesCS5A01G213000.1	Wheat	plastid	25.81	29.3
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	22.58	28.57
TraesCS2A01G342600.1	Wheat	plastid	22.26	27.06

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ncoils:Coil
GO:GO:0005575	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009637
GO:GO:0009765	GO:GO:0009987	GO:GO:0010218	GO:GO:0015979	GO:GO:0016020	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511	EnsemblPlantsGene:TraesCS5A01G177700	EnsemblPlants:TraesCS5A01G177700.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:375286377..375289621

Molecular Weight (calculated)

33854.3 Da

IEP (calculated)

8.816

GRAVY (calculated)

0.198

Length

310 amino acids

Sequence
(BLAST)

001: MPPLLLRSPA PPSSGVLCRR RKSIRVRASW QELAGVLVFS AVPFTAVKAI ANSPLGASLR RRLESRKAFA AAEADALRAA AREARSSSFW YGGARPRWLG
101: PLRYDYPEHL AGEFPGDYGF DIAGLGRDPV AFANYFNFEI LHCRWAMLAA LGVVVPELLD LFGIVHFVEP VWWKVGYAKL QGDTLDYLGI PGFRIAGGQG
201: IIVIAICQAL LMVGPEYARY CGIEALEPLG IYLPGDINYP GGALFDPLGL SKDPVAFEEL KVKEIKNGRL AMVAWIGFYA QAAVTGKGPV QNLVEHLSDP
301: LRNNILSPFL

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.