Factsheet for TraesCS6A01G094500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G016880.1	Barley	plastid	84.92	97.37
TraesCSU01G250000.1	Wheat	plastid	84.92	97.37
TraesCS6A01G094300.1	Wheat	plastid	84.26	96.62
TraesCS6A01G094600.1	Wheat	plastid	80.33	95.7
TraesCS6A01G093700.1	Wheat	plastid	83.28	95.49
HORVU7Hr1G040370.1	Barley	plastid	82.62	94.74
TraesCS6A01G094100.1	Wheat	plastid	82.3	94.36
TraesCS5A01G454200.1	Wheat	plastid	81.64	93.61
TraesCS1A01G403800.1	Wheat	plastid	81.64	93.61
TraesCS5A01G454300.1	Wheat	plastid	81.64	93.61
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	40.66	93.23
TraesCS7A01G238400.1	Wheat	plastid	81.31	93.23
TraesCS1A01G403300.1	Wheat	plastid	80.98	92.86
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	50.49	92.22
HORVU6Hr1G016890.6	Barley	plastid	87.21	91.72
TraesCS7A01G237100.1	Wheat	plastid	79.02	90.6
TraesCS5A01G350600.1	Wheat	plastid	78.03	89.81
Os01t0720500-01	Rice	plastid	78.03	89.81
TraesCS7A01G276400.1	Wheat	plastid	76.39	89.62
TraesCS1A01G306600.1	Wheat	plastid	77.7	89.43
VIT_19s0014g00160.t01	Wine grape	plastid	77.05	88.02
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	77.05	88.02
TraesCS6A01G094400.1	Wheat	plastid	94.75	86.79
VIT_10s0003g02900.t01	Wine grape	plastid	75.08	86.74
VIT_10s0003g02890.t01	Wine grape	plastid	75.08	86.74
VIT_07s0005g02220.t01	Wine grape	plastid	73.11	84.79
VIT_12s0028g00320.t01	Wine grape	plastid	74.75	84.44
PGSC0003DMT400034902	Potato	plastid	36.07	83.97
GSMUA_Achr4P07890_001	Banana	plastid	42.95	82.39
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	87.87	81.96
TraesCS5A01G322500.1	Wheat	plastid	64.59	74.9
TraesCS2A01G204800.1	Wheat	plastid	57.7	65.67
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	39.34	41.67
TraesCS5A01G177700.1	Wheat	plastid	37.38	36.77
TraesCS7A01G227100.1	Wheat	plastid	29.51	36.44
TraesCS6A01G319700.1	Wheat	plastid	29.84	35.83
TraesCS2A01G187200.1	Wheat	plastid	28.85	34.24
TraesCS2A01G206200.1	Wheat	plastid	29.84	31.82
TraesCS5A01G213000.1	Wheat	plastid	28.2	31.5
TraesCS6A01G159800.1	Wheat	plastid	27.21	30.86
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	24.26	30.2
TraesCS2A01G342600.1	Wheat	plastid	24.92	29.8

Protein Annotations

EnsemblPlants:TraesCS6A01G094500.1	EnsemblPlantsGene:TraesCS6A01G094500	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:

Description

No Description!

Coordinates

chr6A:+:61418503..61419420

Molecular Weight (calculated)

32643.1 Da

IEP (calculated)

4.940

GRAVY (calculated)

0.135

Length

305 amino acids

Sequence
(BLAST)

001: MTPPAALSSH LPIFYQIIST PSNLFENPYS TADTFLIFPM AAATMSLSSS TFAGKALKNV PSLAVFGEAR VTMRKTVAKA KQVSSGSPWY GADRVLYLGP
101: LSGEPPSYLT GEFPGDYGWD TAGLSADPET FSKNRELEVI HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI
201: WACQVVLMGA VEGYRVAGGP LGEIVDPLYP GGSFDPLGLA EDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHITDPV NNNAWAFATN
301: FVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.