Factsheet for HORVU7Hr1G040370.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 15682463
plastid: 16758444
plastid: 21440687

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G091660.1	Barley	plastid	97.37	97.37
HORVU6Hr1G016880.1	Barley	plastid	96.62	96.62
HORVU5Hr1G109250.1	Barley	plastid	96.24	96.24
HORVU1Hr1G078380.1	Barley	plastid	95.86	96.23
TraesCSU01G250000.1	Wheat	plastid	95.11	95.11
TraesCS6D01G088600.1	Wheat	plastid	94.74	94.74
HORVU6Hr1G016850.1	Barley	plastid	94.74	94.74
HORVU1Hr1G088880.1	Barley	plastid	94.36	94.36
HORVU1Hr1G088900.1	Barley	plastid	94.36	94.36
Os01t0720500-01	Rice	plastid	90.98	91.32
HORVU6Hr1G091650.1	Barley	plastid	97.37	91.2
HORVU5Hr1G087250.1	Barley	plastid	90.98	90.98
HORVU5Hr1G124160.1	Barley	plastid	90.98	90.98
HORVU6Hr1G016890.6	Barley	plastid	95.86	87.93
HORVU1Hr1G088870.2	Barley	plastid	94.36	86.85
HORVU1Hr1G088920.3	Barley	plastid	96.24	86.49
PGSC0003DMT400034902	Potato	plastid	41.35	83.97
HORVU7Hr1G040380.1	Barley	plastid	97.37	83.01
TraesCS6A01G094500.1	Wheat	plastid	94.74	82.62
HORVU1Hr1G089180.1	Barley	plastid	95.86	80.44
HORVU5Hr1G109260.4	Barley	plastid	95.49	78.4
HORVU5Hr1G109360.1	Barley	plastid	95.49	78.4
TraesCS6A01G094400.1	Wheat	plastid	95.86	76.58
HORVU7Hr1G058120.1	Barley	plastid	89.47	71.69
HORVU2Hr1G040780.7	Barley	plastid	66.92	65.44
HORVU1Hr1G088930.2	Barley	endoplasmic reticulum	27.07	61.02
HORVU5Hr1G082420.1	Barley	plastid	74.44	57.73
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	18.8	41.67
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	43.61	37.42
HORVU4Hr1G015260.2	Barley	plastid	39.47	36.46
HORVU7Hr1G046320.2	Barley	plastid	34.21	31.93
HORVU2Hr1G036960.4	Barley	plastid	33.46	31.56
HORVU5Hr1G066280.1	Barley	plastid	28.2	30.61
HORVU5Hr1G062240.1	Barley	plastid	32.33	30.18
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	26.69	24.23
HORVU5Hr1G013200.1	Barley	plastid	24.44	22.97
HORVU2Hr1G079910.1	Barley	cytosol	13.91	18.23

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:HORVU7Hr1G040370
EnsemblPlants:HORVU7Hr1G040370.1	InterPro:IPR023329	UniProt:M0X0F4	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56
SUPFAM:SSF103511	UniParc:UPI0002953853	SEG:seg	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:M0X0F4]

Coordinates

chrchr7H:-:109373213..109374502

Molecular Weight (calculated)

28277.9 Da

IEP (calculated)

5.092

GRAVY (calculated)

0.133

Length

266 amino acids

Sequence
(BLAST)

001: MAATTMSLSS SAFAGKAVKN MALSALFGEA RVTMRKTAAK AKQVASSSPW YGADRVLYLG PLSGEPPSYL TGEFPGDYGW DTAGLSADPE TFAKNRELEV
101: IHCRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS EGGLDYLGNP SLVHAQSILA IWACQVVLMG AVEGYRIAGG PLGEIVDPLY PGGSFDPLGL
201: AEDPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHIADP VNNNAWAFAT NFVPGK

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.