Factsheet for HORVU1Hr1G089180.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G433300.1	Wheat	plastid	82.33	98.12
TraesCS1D01G411600.1	Wheat	plastid	82.02	97.74
HORVU1Hr1G088900.1	Barley	plastid	82.02	97.74
TraesCS1A01G403800.1	Wheat	plastid	81.7	97.37
HORVU6Hr1G016880.1	Barley	plastid	81.07	96.62
HORVU5Hr1G109250.1	Barley	plastid	80.76	96.24
HORVU6Hr1G091660.1	Barley	plastid	80.76	96.24
HORVU7Hr1G040370.1	Barley	plastid	80.44	95.86
HORVU1Hr1G088880.1	Barley	plastid	80.13	95.49
HORVU1Hr1G078380.1	Barley	plastid	79.81	95.47
HORVU6Hr1G016850.1	Barley	plastid	79.5	94.74
HORVU6Hr1G091650.1	Barley	plastid	81.7	91.2
HORVU6Hr1G016890.6	Barley	plastid	82.65	90.34
HORVU1Hr1G088870.2	Barley	plastid	82.33	90.31
HORVU1Hr1G088920.3	Barley	plastid	83.91	89.86
Os01t0720500-01	Rice	plastid	75.08	89.81
HORVU5Hr1G124160.1	Barley	plastid	74.76	89.1
HORVU5Hr1G087250.1	Barley	plastid	74.76	89.1
PGSC0003DMT400034902	Potato	plastid	35.65	86.26
HORVU5Hr1G109260.4	Barley	plastid	84.23	82.41
HORVU5Hr1G109360.1	Barley	plastid	84.23	82.41
HORVU7Hr1G040380.1	Barley	plastid	79.5	80.77
HORVU7Hr1G058120.1	Barley	plastid	78.55	75.0
HORVU2Hr1G040780.7	Barley	plastid	56.47	65.81
HORVU1Hr1G088930.2	Barley	endoplasmic reticulum	23.03	61.86
HORVU5Hr1G082420.1	Barley	plastid	66.25	61.22
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	15.77	41.67
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	35.96	36.77
HORVU4Hr1G015260.2	Barley	plastid	32.81	36.11
HORVU7Hr1G046320.2	Barley	plastid	29.02	32.28
HORVU2Hr1G036960.4	Barley	plastid	28.39	31.91
HORVU5Hr1G062240.1	Barley	plastid	27.44	30.53
HORVU5Hr1G066280.1	Barley	plastid	23.34	30.2
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	22.4	24.23
HORVU5Hr1G013200.1	Barley	plastid	20.5	22.97
HORVU2Hr1G079910.1	Barley	cytosol	11.67	18.23

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	UniProt:A0A287GMX3	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
EnsemblPlantsGene:HORVU1Hr1G089180	EnsemblPlants:HORVU1Hr1G089180.1	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56
SUPFAM:SSF103511	UniParc:UPI000B47DDBD	SEG:seg	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287GMX3]

Coordinates

chrchr1H:-:543160944..543162130

Molecular Weight (calculated)

33712.3 Da

IEP (calculated)

6.154

GRAVY (calculated)

0.022

Length

317 amino acids

Sequence
(BLAST)

001: LVSIHQPINS SMFPQGSSSL NSSLQCPHKP SPHTQASFLE NTQHTISLCS AMAATTMSLS SSSFAGKALK NLPSPALIGE ARVTMRKTAA KAKQVSSGSP
101: WYGSDRVLYL GPLSGEPPSY LTGEFPGDYG WDTAGLSADP ETFAKNRELE VIHCRWAMLG ALGCVFPELL ARNGVKFGEA VWFKAGSQIF SEGGLDYLGN
201: PSLVHAQSIL AIWACQVVLM GAVEGYRIAG GPLGEIVDPL YPGGSFDPLG LADDPEAFAE LKVKEIKNGR LAMFSMFGFF VQAIVTGKGP LENLADHIAD
301: PVNNNAWAFA TNFVPGK

Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.