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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU5Hr1G124160.1 Barley plastid 100.0 100.0
TraesCS5D01G357600.1 Wheat plastid 99.25 99.62
TraesCS5A01G350600.1 Wheat plastid 99.25 99.62
TraesCS5B01G353200.1 Wheat plastid 98.87 99.25
Zm00001d044402_P001 Maize plastid 90.6 91.29
Zm00001d044401_P001 Maize plastid 90.6 91.29
Zm00001d044399_P001 Maize plastid 90.6 91.29
OQU87124 Sorghum plastid 90.6 91.29
Zm00001d011285_P001 Maize plastid 90.6 91.29
HORVU5Hr1G109250.1 Barley plastid 90.98 90.98
HORVU7Hr1G040370.1 Barley plastid 90.98 90.98
HORVU1Hr1G088880.1 Barley plastid 90.98 90.98
Os01t0720500-01 Rice plastid 90.6 90.94
Zm00001d044396_P001 Maize plastid 90.23 90.91
EES01022 Sorghum plastid 90.23 90.57
HORVU6Hr1G091660.1 Barley plastid 89.85 89.85
HORVU6Hr1G016880.1 Barley plastid 89.85 89.85
HORVU1Hr1G078380.1 Barley plastid 89.1 89.43
HORVU1Hr1G088900.1 Barley plastid 88.35 88.35
HORVU6Hr1G016850.1 Barley plastid 87.97 87.97
HORVU6Hr1G091650.1 Barley plastid 89.85 84.15
HORVU1Hr1G088870.2 Barley plastid 90.98 83.74
HORVU6Hr1G016890.6 Barley plastid 89.1 81.72
HORVU1Hr1G088920.3 Barley plastid 89.1 80.07
PGSC0003DMT400034902 Potato plastid 38.72 78.63
HORVU7Hr1G040380.1 Barley plastid 90.6 77.24
HORVU1Hr1G089180.1 Barley plastid 89.1 74.76
HORVU5Hr1G109360.1 Barley plastid 90.23 74.07
HORVU5Hr1G109260.4 Barley plastid 90.23 74.07
HORVU7Hr1G058120.1 Barley plastid 89.47 71.69
HORVU2Hr1G040780.7 Barley plastid 67.67 66.18
HORVU1Hr1G088930.2 Barley endoplasmic reticulum 27.44 61.86
HORVU5Hr1G082420.1 Barley plastid 74.81 58.02
HORVU2Hr1G041270.2 Barley endoplasmic reticulum, plastid 19.17 42.5
HORVU5Hr1G054000.1 Barley mitochondrion, plastid 44.74 38.39
HORVU4Hr1G015260.2 Barley plastid 40.6 37.5
HORVU7Hr1G046320.2 Barley plastid 34.21 31.93
HORVU5Hr1G066280.1 Barley plastid 29.32 31.84
HORVU2Hr1G036960.4 Barley plastid 33.46 31.56
HORVU5Hr1G062240.1 Barley plastid 31.95 29.82
HORVU2Hr1G079920.1 Barley cytosol, mitochondrion, plastid 26.32 23.89
HORVU5Hr1G013200.1 Barley plastid 24.44 22.97
HORVU2Hr1G079910.1 Barley cytosol 13.91 18.23
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10EMBL:AK372776InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sf
UniProt:F2E9F1GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006091GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009507
GO:GO:0009522GO:GO:0009523GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009765
GO:GO:0009987GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0018298
GO:GO:0019538EnsemblPlantsGene:HORVU5Hr1G087250EnsemblPlants:HORVU5Hr1G087250.1InterPro:IPR023329PFAM:PF00504PANTHER:PTHR21649
PANTHER:PTHR21649:SF56SUPFAM:SSF103511UniParc:UPI00020087BFSEG:seg::
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:F2E9F1]
Coordinates
chrchr5H:-:578098095..578099431
Molecular Weight (calculated)
28091.7 Da
IEP (calculated)
5.085
GRAVY (calculated)
0.091
Length
266 amino acids
Sequence
(BLAST)
001: MAAAATMALS SPAMAGTPVK ASRAAPFGEG RITMRKTAGK PKVAASSSPW YGSDRVLYLG PLSGDPPSYL TGEFPGDYGW DTAGLSADPE TFAKNRELEV
101: IHCRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS EGGLDYLGNP SLVHAQSILA IWACQVVLMG AVEGYRVAGG PLGEIVDPLY PGGSFDPLGL
201: AEDPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.