Factsheet for HORVU5Hr1G013200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid

plastid: 15682463
plastid: 16758444
plastid: 21440687

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g014520.2.1	Tomato	plastid	70.67	70.18
PGSC0003DMT400021871	Potato	plastid	69.26	68.77
Bra029732.1-P	Field mustard	plastid	69.61	68.4
CDY44667	Canola	plastid	69.61	68.4
CDY53084	Canola	plastid	69.26	67.82
Bra028906.1-P	Field mustard	plastid	68.9	67.71
CDY04834	Canola	plastid	68.55	67.6
AT3G08940.2	Thale cress	plastid	68.2	67.25
AT5G01530.1	Thale cress	plastid	67.49	65.86
VIT_08s0007g02190.t01	Wine grape	plastid	69.96	57.89
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	28.27	54.79
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	20.14	47.5
HORVU1Hr1G088880.1	Barley	plastid	23.67	25.19
HORVU7Hr1G040370.1	Barley	plastid	22.97	24.44
HORVU6Hr1G091660.1	Barley	plastid	22.97	24.44
HORVU6Hr1G016850.1	Barley	plastid	22.97	24.44
HORVU5Hr1G124160.1	Barley	plastid	22.97	24.44
HORVU5Hr1G087250.1	Barley	plastid	22.97	24.44
HORVU1Hr1G078380.1	Barley	plastid	22.61	24.15
HORVU5Hr1G066280.1	Barley	plastid	20.85	24.08
HORVU6Hr1G016880.1	Barley	plastid	22.61	24.06
HORVU5Hr1G109250.1	Barley	plastid	22.26	23.68
HORVU1Hr1G088900.1	Barley	plastid	22.26	23.68
HORVU7Hr1G046320.2	Barley	plastid	23.67	23.51
HORVU1Hr1G088870.2	Barley	plastid	23.67	23.18
HORVU2Hr1G040780.7	Barley	plastid	22.26	23.16
HORVU2Hr1G036960.4	Barley	plastid	22.97	23.05
HORVU6Hr1G091650.1	Barley	plastid	22.97	22.89
HORVU5Hr1G062240.1	Barley	plastid	22.26	22.11
HORVU6Hr1G016890.6	Barley	plastid	22.61	22.07
HORVU1Hr1G088920.3	Barley	plastid	22.97	21.96
HORVU2Hr1G079910.1	Barley	cytosol	15.55	21.67
HORVU7Hr1G040380.1	Barley	plastid	22.61	20.51
HORVU1Hr1G089180.1	Barley	plastid	22.97	20.5
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	20.14	19.45
HORVU5Hr1G109360.1	Barley	plastid	22.26	19.44
HORVU5Hr1G109260.4	Barley	plastid	22.26	19.44
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	21.2	19.35
HORVU5Hr1G082420.1	Barley	plastid	22.61	18.66
HORVU7Hr1G058120.1	Barley	plastid	21.55	18.37
HORVU1Hr1G088930.2	Barley	endoplasmic reticulum	7.07	16.95
HORVU4Hr1G015260.2	Barley	plastid	16.96	16.67

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	UniProt:A0A287QEG7	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009637	GO:GO:0009765	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
EnsemblPlantsGene:HORVU5Hr1G013200	EnsemblPlants:HORVU5Hr1G013200.1	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF6
SUPFAM:SSF103511	UniParc:UPI000B46F610	SEG:seg	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287QEG7]

Coordinates

chrchr5H:-:41895507..41896512

Molecular Weight (calculated)

27730.2 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.051

Length

283 amino acids

Sequence
(BLAST)

001: AATTAAAATS SFMGTRLTDA YSNSGRIQAR FGFGAKKSAP RKTAKPISDR PLWFPGAKAP EYLDGSLVGD YGFDPFGLGK PAEYLQFDLD SLDQNLAKNL
101: AGDVIGTRFE NADVKSTPFQ PYSEVFGLQR FRECELIHGR WAMLATLGAL SVEWLTGITW QDAGKVELIE GSSYLGQPLP FSITTLIWIE VLVIGYIEFQ
201: RNAELDPEKR LYPGGKYFDP LGXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXNSIR CYCWLENKDI LIKCIFFMAF LFL

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.