Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01530.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT5G01530.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028906.1-P | Field mustard | plastid | 100.0 | 99.65 |
| CDY44667 | Canola | plastid | 94.08 | 93.75 |
| AT5G01530.1 | Thale cress | plastid | 93.73 | 92.76 |
| CDY53084 | Canola | plastid | 93.38 | 92.73 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 46.69 | 91.78 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 37.63 | 90.0 |
| Solyc09g014520.2.1 | Tomato | plastid | 85.37 | 85.96 |
| PGSC0003DMT400021871 | Potato | plastid | 84.32 | 84.91 |
| KRH75874 | Soybean | mitochondrion, nucleus, plastid | 85.71 | 84.83 |
| KRH65776 | Soybean | nucleus, plastid | 85.71 | 84.83 |
| Os07t0558400-01 | Rice | plasma membrane, plastid | 83.28 | 82.41 |
| EER99537 | Sorghum | plastid | 81.88 | 81.6 |
| TraesCS2D01G209900.1 | Wheat | plastid | 80.84 | 81.12 |
| TraesCS2B01G233400.1 | Wheat | plastid | 80.84 | 81.12 |
| TraesCS2A01G206200.1 | Wheat | plastid | 80.84 | 81.12 |
| Zm00001d021763_P001 | Maize | plastid | 81.88 | 80.76 |
| Zm00001d006587_P001 | Maize | plastid | 81.18 | 80.07 |
| CDY20518 | Canola | plastid | 67.6 | 70.29 |
| CDX74808 | Canola | plastid | 66.9 | 69.57 |
| VIT_08s0007g02190.t01 | Wine grape | plastid | 82.23 | 69.01 |
| HORVU5Hr1G013200.1 | Barley | plastid | 67.6 | 68.55 |
| CDY61708 | Canola | plastid | 52.61 | 43.14 |
| CDX67613 | Canola | plastid | 34.49 | 41.08 |
| CDY07517 | Canola | plastid | 34.49 | 41.08 |
| CDX78277 | Canola | plastid | 34.49 | 41.08 |
| CDX73435 | Canola | plastid | 34.49 | 41.08 |
| CDY30369 | Canola | plastid | 21.25 | 40.13 |
| CDX83967 | Canola | extracellular, vacuole | 3.14 | 39.13 |
| CDY66572 | Canola | cytosol, extracellular, plastid | 18.12 | 36.36 |
| CDX79562 | Canola | plastid | 33.45 | 36.09 |
| CDX84316 | Canola | plastid | 33.45 | 36.09 |
| CDX84647 | Canola | plastid | 33.45 | 36.09 |
| CDY17247 | Canola | plastid | 33.45 | 36.09 |
| CDY17248 | Canola | plastid | 33.45 | 36.09 |
| CDY43198 | Canola | plastid | 33.45 | 35.96 |
| CDY66768 | Canola | plastid | 33.1 | 35.58 |
| CDY43676 | Canola | plastid | 33.1 | 35.58 |
| CDY26306 | Canola | plastid | 33.1 | 35.58 |
| CDY35271 | Canola | plastid | 33.1 | 35.58 |
| CDX90218 | Canola | plastid | 33.1 | 35.58 |
| CDX98158 | Canola | plastid | 33.1 | 35.58 |
| CDX99866 | Canola | plastid | 33.1 | 35.58 |
| CDX99044 | Canola | plastid | 31.01 | 35.32 |
| CDY47410 | Canola | plastid | 31.01 | 35.32 |
| CDY17250 | Canola | mitochondrion, plastid | 19.86 | 34.97 |
| CDY43936 | Canola | plastid | 30.31 | 33.98 |
| CDX83966 | Canola | plastid | 26.48 | 33.33 |
| CDY33376 | Canola | plastid | 29.97 | 33.33 |
| CDY52865 | Canola | plastid | 29.97 | 33.2 |
| CDX81735 | Canola | plastid | 29.97 | 33.2 |
| CDY51572 | Canola | plastid | 29.97 | 33.2 |
| CDX89120 | Canola | plastid | 29.62 | 33.2 |
| CDY35042 | Canola | plastid | 29.62 | 32.95 |
| CDX93077 | Canola | plastid | 30.31 | 32.83 |
| CDY15050 | Canola | plastid | 30.31 | 32.83 |
| CDX83783 | Canola | plastid | 30.31 | 32.71 |
| CDX96677 | Canola | plastid | 29.97 | 32.33 |
| CDY20039 | Canola | plastid | 29.62 | 32.08 |
| CDY14320 | Canola | plastid | 26.13 | 32.05 |
| CDY18320 | Canola | plastid | 26.13 | 32.05 |
| CDX96833 | Canola | plastid | 28.92 | 32.05 |
| CDY49770 | Canola | plastid | 29.62 | 31.95 |
| CDY13732 | Canola | plastid | 29.62 | 31.95 |
| CDX83726 | Canola | plastid | 29.62 | 31.95 |
| CDY00149 | Canola | plastid | 29.62 | 31.95 |
| CDY03989 | Canola | plastid | 29.62 | 31.95 |
| CDY43213 | Canola | mitochondrion, plastid | 28.57 | 31.78 |
| CDY17055 | Canola | mitochondrion, plastid | 28.57 | 31.78 |
| CDY12903 | Canola | plastid | 29.62 | 31.37 |
| CDY57375 | Canola | plastid | 29.62 | 31.37 |
| CDY52238 | Canola | plastid | 25.44 | 31.2 |
| CDX90755 | Canola | plastid | 29.97 | 30.71 |
| CDY15020 | Canola | plastid | 28.92 | 30.63 |
| CDY05098 | Canola | plastid | 29.62 | 30.36 |
| CDY60092 | Canola | plastid | 29.62 | 30.25 |
| CDY03835 | Canola | plastid | 28.57 | 30.04 |
| CDY47581 | Canola | plastid | 28.57 | 30.04 |
| CDY26347 | Canola | plastid | 26.48 | 29.8 |
| CDX84315 | Canola | plastid | 33.45 | 29.18 |
| CDY20401 | Canola | plastid | 31.71 | 27.83 |
| CDY45980 | Canola | plastid | 30.66 | 27.16 |
| CDY28778 | Canola | plastid | 23.69 | 26.56 |
| CDX86864 | Canola | plastid | 18.47 | 25.36 |
Protein Annotations
| MapMan:1.1.1.1.2 | Gene3D:1.10.3460.10 | GO:A0A078EW62 | EnsemblPlants:CDY04834 | ProteinID:CDY04834 | ProteinID:CDY04834.1 |
| InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0010114 | GO:GO:0010218 |
| GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0019904 | EnsemblPlantsGene:GSBRNA2T00119546001 | InterPro:IPR023329 |
| PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF6 | SUPFAM:SSF103511 | UniParc:UPI0004EE76DE | SEG:seg |
Description
BnaAnng00160DChlorophyll a-b binding protein CP29.1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G01530) UniProtKB/Swiss-Prot;Acc:Q07473]
Coordinates
chrLK031958:-:171630..173038
Molecular Weight (calculated)
31144.2 Da
IEP (calculated)
5.730
GRAVY (calculated)
-0.089
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATPTAAAS SIMGTRVVPD INSGSGRITA RFGFGKKKAA PKKTKTVVTT DRPLWYPGAK SPEWLDGSLV GDYGFDPFGL GKPAEYLQFD IDSLDQNLAK
101: NLAGDVIGTR TEEAAPKSTP FQPYSEVFGI QRFRECELIH GRWAMLATLG ALSVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPE KMAQLQLAEI KHARLAMVAF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
101: NLAGDVIGTR TEEAAPKSTP FQPYSEVFGI QRFRECELIH GRWAMLATLG ALSVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPE KMAQLQLAEI KHARLAMVAF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
Arabidopsis Description
LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.