CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14320	Canola	plastid	99.57	99.57
CDY52238	Canola	plastid	94.87	94.87
CDY66572	Canola	cytosol, extracellular, plastid	55.56	90.91
Bra002999.1-P	Field mustard	plastid	99.15	87.55
TraesCS2A01G204800.1	Wheat	plastid	84.19	73.51
TraesCS1D01G428200.1	Wheat	plastid	84.19	73.51
TraesCS1B01G451100.1	Wheat	plastid	84.19	73.51
Os07t0562700-01	Rice	extracellular, plastid	81.2	71.43
CDY28778	Canola	plastid	77.35	70.7
HORVU2Hr1G040780.7	Barley	plastid	82.05	70.59
CDY15050	Canola	plastid	67.95	60.0
CDX93077	Canola	plastid	67.95	60.0
CDX99866	Canola	plastid	67.95	59.55
CDY26306	Canola	plastid	67.95	59.55
CDY03989	Canola	plastid	67.52	59.4
CDY20039	Canola	plastid	67.09	59.25
CDX90218	Canola	plastid	67.52	59.18
CDY35271	Canola	plastid	67.52	59.18
CDY43676	Canola	plastid	67.52	59.18
CDY66768	Canola	plastid	67.52	59.18
CDX84647	Canola	plastid	67.09	59.02
CDY49770	Canola	plastid	67.09	59.02
CDY13732	Canola	plastid	67.09	59.02
CDX79562	Canola	plastid	67.09	59.02
CDY00149	Canola	plastid	67.09	59.02
CDY17247	Canola	plastid	66.67	58.65
CDX84316	Canola	plastid	66.67	58.65
CDY43198	Canola	plastid	66.67	58.43
CDX98158	Canola	plastid	66.67	58.43
CDX83726	Canola	plastid	66.24	58.27
CDY17248	Canola	plastid	66.24	58.27
CDY30369	Canola	plastid	37.18	57.24
CDY17250	Canola	mitochondrion, plastid	36.32	52.15
CDX84315	Canola	plastid	66.67	47.42
CDX83967	Canola	extracellular, vacuole	3.85	39.13
CDX90755	Canola	plastid	42.73	35.71
CDY05098	Canola	plastid	42.73	35.71
CDY60092	Canola	plastid	42.31	35.23
CDX78277	Canola	plastid	32.48	31.54
CDY57375	Canola	plastid	36.32	31.37
CDY12903	Canola	plastid	36.32	31.37
CDY43936	Canola	plastid	34.19	31.25
CDX67613	Canola	plastid	32.05	31.12
CDX73435	Canola	plastid	32.05	31.12
CDY07517	Canola	plastid	32.05	31.12
CDY15020	Canola	plastid	35.9	31.0
CDY26347	Canola	plastid	33.76	30.98
CDX89120	Canola	plastid	33.76	30.86
CDY03835	Canola	plastid	35.9	30.77
CDY47581	Canola	plastid	35.9	30.77
CDX99044	Canola	plastid	32.48	30.16
CDY47410	Canola	plastid	32.48	30.16
CDY51572	Canola	plastid	33.33	30.12
CDX83966	Canola	plastid	28.63	29.39
CDY45980	Canola	plastid	40.6	29.32
CDY20401	Canola	plastid	40.17	28.75
CDX86864	Canola	plastid	25.21	28.23
CDX96833	Canola	plastid	31.2	28.19
CDY52865	Canola	plastid	30.77	27.8
CDY35042	Canola	plastid	30.34	27.52
CDY33376	Canola	plastid	30.34	27.52
CDY43213	Canola	mitochondrion, plastid	30.34	27.52
CDX81735	Canola	plastid	30.34	27.41
CDY17055	Canola	mitochondrion, plastid	29.91	27.13
CDY44667	Canola	plastid	32.48	26.39
CDX83783	Canola	plastid	29.91	26.32
CDX96677	Canola	plastid	29.91	26.32
CDY53084	Canola	plastid	32.48	26.3
CDY04834	Canola	plastid	32.05	26.13
CDX74808	Canola	plastid	27.78	23.55
CDY20518	Canola	plastid	27.35	23.19
CDY61708	Canola	plastid	23.5	15.71

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	GO:A0A078FV38	UniProt:A0A078FV38	EnsemblPlants:CDY18320	ProteinID:CDY18320
ProteinID:CDY18320.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00002895001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	UniParc:UPI0004EEDCA5	:

Description

BnaC09g30700DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078FV38]

Coordinates

chrLK032084:+:359164..360320

Molecular Weight (calculated)

25389.2 Da

IEP (calculated)

4.839

GRAVY (calculated)

-0.088

Length

234 amino acids

Sequence
(BLAST)

001: MASTFMSSSS VLTPTPFLGQ TKGSTFNPLR DAVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGALGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GFRINGLDGV GEGNDLYPGG QYFDPLGLAD DPVTLAELKV KEIKNGRLAM FSMFGFFVQA
201: IVTGKGPLEN LLDHLDNPVA NNAWAFATKF VPGA

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.