CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35042	Canola	plastid	98.45	98.45
Bra026099.1-P	Field mustard	plastid	96.9	96.9
CDX83967	Canola	extracellular, vacuole	8.53	95.65
CDY52865	Canola	plastid	95.35	94.98
CDX81735	Canola	plastid	95.35	94.98
CDX96833	Canola	plastid	94.96	94.59
AT1G15820.1	Thale cress	plastid	93.8	93.8
KRH10515	Soybean	mitochondrion, nucleus, plastid	83.33	82.69
VIT_12s0055g01110.t01	Wine grape	plastid	82.17	82.49
KRH43915	Soybean	mitochondrion, nucleus, plastid	83.33	82.38
Solyc01g105050.2.1	Tomato	plastid	81.4	82.03
PGSC0003DMT400032790	Potato	plastid	81.4	82.03
CDX83966	Canola	plastid	71.71	81.14
PGSC0003DMT400032791	Potato	plastid	80.23	80.86
Solyc01g105030.2.1	Tomato	plastid	79.84	80.47
CDX89120	Canola	plastid	34.5	34.77
CDY43936	Canola	plastid	34.5	34.77
CDY51572	Canola	plastid	34.88	34.75
CDX83783	Canola	plastid	35.66	34.59
CDX96677	Canola	plastid	35.66	34.59
CDX67613	Canola	plastid	32.17	34.44
CDX78277	Canola	plastid	32.17	34.44
CDY07517	Canola	plastid	32.17	34.44
CDX73435	Canola	plastid	31.78	34.02
CDY43213	Canola	mitochondrion, plastid	33.33	33.33
CDY17055	Canola	mitochondrion, plastid	32.95	32.95
CDX74808	Canola	plastid	34.11	31.88
CDY20518	Canola	plastid	33.33	31.16
CDY18320	Canola	plastid	27.52	30.34
CDY04834	Canola	plastid	33.33	29.97
CDY14320	Canola	plastid	27.13	29.91
CDY44667	Canola	plastid	33.33	29.86
CDX99044	Canola	plastid	29.07	29.76
CDY47410	Canola	plastid	29.07	29.76
CDY53084	Canola	plastid	33.33	29.76
CDY52238	Canola	plastid	26.74	29.49
CDY66572	Canola	cytosol, extracellular, plastid	16.28	29.37
CDY17247	Canola	plastid	30.23	29.32
CDY17248	Canola	plastid	30.23	29.32
CDX84316	Canola	plastid	30.23	29.32
CDX99866	Canola	plastid	30.23	29.21
CDY66768	Canola	plastid	30.23	29.21
CDY43676	Canola	plastid	30.23	29.21
CDX90218	Canola	plastid	30.23	29.21
CDY35271	Canola	plastid	30.23	29.21
CDY26306	Canola	plastid	30.23	29.21
CDY30369	Canola	plastid	17.05	28.95
CDX79562	Canola	plastid	29.84	28.95
CDX84647	Canola	plastid	29.84	28.95
CDY43198	Canola	plastid	29.84	28.84
CDX98158	Canola	plastid	29.84	28.84
CDY03835	Canola	plastid	30.23	28.57
CDY47581	Canola	plastid	30.23	28.57
CDY17250	Canola	mitochondrion, plastid	17.83	28.22
CDY12903	Canola	plastid	29.46	28.04
CDY15020	Canola	plastid	29.46	28.04
CDY26347	Canola	plastid	27.52	27.84
CDY57375	Canola	plastid	29.07	27.68
CDY28778	Canola	plastid	25.58	25.78
CDY15050	Canola	plastid	26.36	25.66
CDX93077	Canola	plastid	26.36	25.66
CDY20039	Canola	plastid	26.36	25.66
CDY49770	Canola	plastid	26.36	25.56
CDY13732	Canola	plastid	26.36	25.56
CDY03989	Canola	plastid	26.36	25.56
CDY00149	Canola	plastid	26.36	25.56
CDX83726	Canola	plastid	26.36	25.56
CDX90755	Canola	plastid	26.36	24.29
CDY05098	Canola	plastid	26.36	24.29
CDY60092	Canola	plastid	26.36	24.2
CDX84315	Canola	plastid	29.84	23.4
CDY45980	Canola	plastid	28.29	22.53
CDY20401	Canola	plastid	28.29	22.32
CDX86864	Canola	plastid	16.67	20.57
CDY61708	Canola	plastid	25.19	18.57

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	GO:A0A078H682	UniProt:A0A078H682	EnsemblPlants:CDY33376	ProteinID:CDY33376
ProteinID:CDY33376.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009941	GO:GO:0009987	GO:GO:0010196	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019904	EnsemblPlantsGene:GSBRNA2T00054222001
InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF2	SUPFAM:SSF103511	UniParc:UPI0004EE125F
SEG:seg	:	:	:	:	:

Description

BnaC05g12070DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078H682]

Coordinates

chrLK032312:+:311799..312986

Molecular Weight (calculated)

27654.2 Da

IEP (calculated)

9.330

GRAVY (calculated)

-0.032

Length

258 amino acids

Sequence
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRSASALGN NVGAGAPRVG RKNLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVPWFEA GADPRAIAPF SFGTLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSR TAENFANYTG DQGYPGGRFF
201: DPLGLAGKSR DGVYEPDREK LERLKLAEIK HSRLAMLAML IFYFEAGQGK TPLGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.