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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 21417358
msms PMID: 21417358 doi
DR Demartini, R Jain, G Agrawal, JJ Thelen
Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68161
CDX69273
CDX73122
CDX75624
CDX80928
CDX85860
CDY01120
CDY11316
CDY20340
CDY24170
CDY29727
CDY36943
CDY42827
CDY43444
CDY45402
CDY47326
CDY51514
CDY55390
CDY61202
CDY67729

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G29910.1 CDX68161 AT1G74890.1 18642946
AT1G29910.1 CDX73122 AT1G74890.1 18642946
AT1G29910.1 CDX85860 AT1G74890.1 18642946
AT1G29910.1 CDY45402 AT1G74890.1 18642946
AT1G29910.1 CDY24170 AT3G47620.1 21798944
AT1G29910.1 CDY36943 AT3G47620.1 21798944
AT1G29920.1 CDX68161 AT1G74890.1 18642946
AT1G29920.1 CDX73122 AT1G74890.1 18642946
AT1G29920.1 CDX85860 AT1G74890.1 18642946
AT1G29920.1 CDY45402 AT1G74890.1 18642946
AT1G29920.1 CDY20340 AT3G44880.1 22366162
AT1G29920.1 CDY29727 AT3G44880.1 22366162
AT1G29920.1 CDY01120 AT4G13250.1 22366162
AT1G29920.1 CDY47326 AT4G13250.1 22366162
AT1G29920.1 CDY67729 AT4G13250.1 22366162
AT1G29920.1 CDX69273 AT4G37000.1 22366162
AT1G29920.1 CDX75624 AT4G37000.1 22366162
AT1G29920.1 CDX80928 AT5G04900.1 22366162
AT1G29920.1 CDY11316 AT5G04900.1 22366162
AT1G29920.1 CDY43444 AT5G04900.1 22366162
AT1G29930.1 CDY42827 AT2G42580.1 19000166
AT1G29930.1 CDY51514 AT2G42580.1 19000166
AT1G29930.1 CDY55390 AT2G42580.1 19000166
AT1G29930.1 CDY61202 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra021909.1-P Field mustard cytosol, extracellular, plastid 60.53 100.0
CDX84647 Canola plastid 99.62 99.62
Bra022976.1-P Field mustard plastid 99.25 99.25
CDY17247 Canola plastid 98.12 98.12
CDY17248 Canola plastid 98.12 98.12
CDY30369 Canola plastid 56.02 98.03
CDX84316 Canola plastid 97.74 97.74
CDY66768 Canola plastid 97.74 97.38
CDY43676 Canola plastid 97.74 97.38
CDX90218 Canola plastid 97.37 97.0
CDY35271 Canola plastid 97.37 97.0
CDY26306 Canola plastid 97.37 97.0
AT2G34430.1 Thale cress plastid 96.62 96.62
GSMUA_Achr10P... Banana cytosol, extracellular, plastid 48.12 96.24
CDX99866 Canola plastid 96.24 95.88
CDY43198 Canola plastid 95.86 95.51
AT1G29930.1 Thale cress plastid 95.86 95.51
AT2G34420.1 Thale cress plastid 95.11 95.47
AT1G29920.1 Thale cress plastid 95.49 95.13
AT1G29910.1 Thale cress plastid 95.49 95.13
CDX98158 Canola plastid 94.74 94.38
CDY17250 Canola mitochondrion, plastid 48.87 79.75
CDX84315 Canola plastid 96.62 78.12
CDX93077 Canola plastid 75.56 75.85
CDY15050 Canola plastid 75.56 75.85
CDY00149 Canola plastid 75.19 75.19
CDY20039 Canola plastid 74.81 75.09
CDY49770 Canola plastid 74.81 74.81
CDY13732 Canola plastid 74.81 74.81
CDY03989 Canola plastid 74.44 74.44
CDX83726 Canola plastid 74.06 74.06
CDY66572 Canola cytosol, extracellular, plastid 37.59 69.93
CDY52238 Canola plastid 59.4 67.52
CDY14320 Canola plastid 59.4 67.52
CDY18320 Canola plastid 59.02 67.09
CDY28778 Canola plastid 58.65 60.94
CDY05098 Canola plastid 42.48 40.36
CDX73435 Canola plastid 36.47 40.25
CDX90755 Canola plastid 42.11 40.0
CDX67613 Canola plastid 36.09 39.83
CDX78277 Canola plastid 36.09 39.83
CDY07517 Canola plastid 36.09 39.83
CDY60092 Canola plastid 41.73 39.5
CDX83967 Canola extracellular, vacuole 3.38 39.13
CDY43936 Canola plastid 35.34 36.72
CDX89120 Canola plastid 34.96 36.33
CDY51572 Canola plastid 34.21 35.14
CDY45980 Canola plastid 42.11 34.57
CDY44667 Canola plastid 36.84 34.03
CDY20401 Canola plastid 41.73 33.95
CDY53084 Canola plastid 36.84 33.91
CDX83783 Canola plastid 33.46 33.46
CDX96677 Canola plastid 33.46 33.46
CDY04834 Canola plastid 36.09 33.45
CDY57375 Canola plastid 33.83 33.21
CDY12903 Canola plastid 33.83 33.21
CDX86864 Canola plastid 25.94 33.01
CDY47410 Canola plastid 31.2 32.94
CDX99044 Canola plastid 31.2 32.94
CDY15020 Canola plastid 33.46 32.84
CDY47581 Canola plastid 33.08 32.23
CDY03835 Canola plastid 33.08 32.23
CDY26347 Canola plastid 30.45 31.76
CDX74808 Canola plastid 32.71 31.52
CDX81735 Canola plastid 30.45 31.27
CDY20518 Canola plastid 32.33 31.16
CDY52865 Canola plastid 30.08 30.89
CDY43213 Canola mitochondrion, plastid 29.32 30.23
CDX96833 Canola plastid 29.32 30.12
CDY33376 Canola plastid 28.95 29.84
CDY35042 Canola plastid 28.95 29.84
CDY17055 Canola mitochondrion, plastid 28.95 29.84
CDX83966 Canola plastid 24.81 28.95
CDY61708 Canola plastid 27.82 21.14
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10GO:A0A078CS56EnsemblPlants:CDX79562ProteinID:CDX79562ProteinID:CDX79562.1
InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0005575GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020EnsemblPlantsGene:GSBRNA2T00132322001
InterPro:IPR023329PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF55SUPFAM:SSF103511UniParc:UPI0004EF1CB5
Description
BnaC03g18980D
Coordinates
chrLK031818:-:818999..819799
Molecular Weight (calculated)
28263.7 Da
IEP (calculated)
4.931
GRAVY (calculated)
0.015
Length
266 amino acids
Sequence
(BLAST)
001: MAASTMALSS PAFTGKAVKL SPGASEVFGT GRVTMRKTVK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGEG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
Best Arabidopsis Sequence Match ( AT2G34430.1 )
(BLAST)
001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
Arabidopsis Description
LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.