CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80928	plastid
CDY01120
CDY11316	plastid
CDY20340	plastid
CDY29727	plastid
CDY43444	plastid
CDY47326
CDY67729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	CDY20340	AT3G44880.1	22366162
AT4G37000.1	CDY29727	AT3G44880.1	22366162
AT4G37000.1	CDY20340	AT3G44880.1	22366162
AT4G37000.1	CDY29727	AT3G44880.1	22366162
AT4G37000.1	CDY01120	AT4G13250.1	22366162
AT4G37000.1	CDY47326	AT4G13250.1	22366162
AT4G37000.1	CDY67729	AT4G13250.1	22366162
AT4G37000.1	CDX80928	AT5G04900.1	22366162
AT4G37000.1	CDY11316	AT5G04900.1	22366162
AT4G37000.1	CDY43444	AT5G04900.1	22366162
AT4G37000.1	CDX80928	AT5G04900.1	22366162
AT4G37000.1	CDY11316	AT5G04900.1	22366162
AT4G37000.1	CDY43444	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75624	Canola	cytosol	50.95	95.37
AT4G37000.1	Thale cress	plastid	48.1	79.31
PGSC0003DMT400048861	Potato	cytosol	26.62	51.28
KRH14207	Soybean	plastid	30.61	50.0
KRH73924	Soybean	plastid	31.18	49.85
VIT_07s0031g00680.t01	Wine grape	plastid	30.42	49.69
Solyc03g044470.2.1	Tomato	plastid	27.19	45.54
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	17.49	43.81
KXG28420	Sorghum	cytosol	16.73	42.93
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.78	40.1
HORVU7Hr1G113230.1	Barley	mitochondrion	21.67	39.86
TraesCS6A01G006200.1	Wheat	plastid	23.19	38.98
TraesCS6D01G009000.1	Wheat	plastid	22.62	37.9
GSMUA_Achr9P29140_001	Banana	plastid	23.76	37.88
Os10t0389100-01	Rice	endoplasmic reticulum	12.17	37.87
Zm00001d030549_P001	Maize	plastid	22.81	36.14
Os10t0389200-01	Rice	plasma membrane	22.43	35.87
EER91980	Sorghum	plastid	20.91	34.59
OQU86787	Sorghum	plastid	23.19	31.94
Os10t0389300-02	Rice	plastid	18.63	30.15
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	23.95	27.69

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:1.10.238.10	MapMan:14.6.1.1	MapMan:16.11.2.3	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6
GO:A0A078C2H3	EnsemblPlants:CDX69273	ProteinID:CDX69273	ProteinID:CDX69273.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0051743
EnsemblPlantsGene:GSBRNA2T00131092001	InterPro:IPR002048	PFAM:PF06405	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR34685	PANTHER:PTHR34685:SF2	InterPro:RCC_reductase	SMART:SM00054	SUPFAM:SSF47473	UniPathway:UPA00674
UniParc:UPI0004EDDB90	SEG:seg	:	:	:	:

Description

BnaC01g01800D

Coordinates

chrLK031789:-:3829492..3832369

Molecular Weight (calculated)

60244.8 Da

IEP (calculated)

5.126

GRAVY (calculated)

-0.469

Length

526 amino acids

Sequence
(BLAST)

001: MAMIFCNTLL YSSSPFLSPL PSIRSKPSRF SKRVLTVQAQ FQSMDQNDLL LRQKFMEFPY VSPTRRELMV DLMSTLEDRL HSQLLPCSLP TDVRNFKNPN
101: GSAEASLHIR SGEKSSPVKE SNLNALCMLV LEFQLHDSDR TRVQFCNELK HIDFVIGSWI HVKIPTGVSL NITSISAFLN SSTEAPNFVV ELIQSSPTSL
201: VLILDLPHRK DLVRHPDYLQ TFYQDTALDT HRQSLLKLPE IKPYVSPSLF VRSAFSPTAS MLKIDAEEGE RLEEILREHV SPAAKQVLEV WLERCAKEEE
301: GEERVVGEEE KLELERRDKS FRKKSIEEDL DLQFPRMFGD EVSSRVIHAI KEAFGASFAS GAAQFRRGLK TKGKTYGLTN QKRREIREIF DLFDIDGSGT
401: IDARELNVAM RSLGFEMTNE QINELMAEVD KNNSGTIDFE EFVHMMTTKF GERDSKDELS KAFKIIDHDN NGKISPHDIK QIAKELGENF TDNEIEEMIE
501: EADRDKDGEV SLEEFMKMMR RTSYGY

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.