Factsheet for Os10t0389100-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0227100-01
Os03t0146400-01	plastid
Os03t0654600-01	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	Os03t0146400-01	AT3G44880.1	22366162
AT4G37000.1	Os03t0146400-01	AT3G44880.1	22366162
AT4G37000.1	Os01t0227100-01	AT4G13250.1	22366162
AT4G37000.1	Os03t0654600-01	AT5G04900.1	22366162
AT4G37000.1	Os03t0654600-01	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	63.91	51.43
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.95	49.76
Os10t0389200-01	Rice	plasma membrane	83.43	42.86
HORVU7Hr1G113230.1	Barley	mitochondrion	66.86	39.51
TraesCS6A01G006200.1	Wheat	plastid	69.23	37.38
TraesCS6D01G009000.1	Wheat	plastid	68.64	36.94
Zm00001d030549_P001	Maize	plastid	63.31	32.23
OQU86787	Sorghum	plastid	64.5	28.53
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	66.27	24.62
GSMUA_Achr9P29140_001	Banana	plastid	46.15	23.64
Os10t0389300-02	Rice	plastid	44.97	23.38
CDX75624	Canola	cytosol	38.46	23.13
PGSC0003DMT400048861	Potato	cytosol	34.91	21.61
KRH14207	Soybean	plastid	40.83	21.43
VIT_07s0031g00680.t01	Wine grape	plastid	40.24	21.12
KRH73924	Soybean	plastid	40.83	20.97
AT4G37000.1	Thale cress	plastid	38.46	20.38
Solyc03g044470.2.1	Tomato	plastid	35.5	19.11
Bra011734.1-P	Field mustard	plastid	37.87	13.06
CDX69273	Canola	plastid	37.87	12.17

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	ProteinID:ABB47485.1	ProteinID:BAF26413.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015996
GO:GO:0016020	GO:GO:0016021	GO:GO:0051743	GO:GO:0055114	EnsemblPlantsGene:Os10g0389100	EnsemblPlants:Os10t0389100-01
PFAM:PF06405	PANTHER:PTHR34685	UniProt:Q338P7	InterPro:RCC_reductase	UniParc:UPI00005E1E11	SEG:seg

Description

RED CHLOROPHYLL CATABOLITE REDUCTASE 3Red chlorophyll catabolite reductase, Truncated copy of OsRCCR1 (Os10t0389100-01)

Coordinates

chr10:-:12879408..12880295

Molecular Weight (calculated)

18868.1 Da

IEP (calculated)

4.710

GRAVY (calculated)

0.159

Length

169 amino acids

Sequence
(BLAST)

001: MATIGLLKRL CLIRDLFLPL KDFFLLSKEK IDFMLQSSLH CKVPNGAIDI TSLLIFLNAS TDAPHFLMEF IQAILMSIDC GQGGEGTLEE IVRGQLATAA
101: RALLQIWLDS CADHTSEMEE GERENMIKRD QIVRSKSIEV DLTSNLPRMF GPDVADRVIA EIQKAFGVQ

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.