Factsheet for TraesCS6A01G006200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G151900.1
TraesCS3B01G179100.1
TraesCS3D01G159800.1
TraesCS4A01G261200.1	plastid
TraesCS4A01G299400.1	plastid
TraesCS4A01G411000.1	plastid
TraesCS4B01G311100.1	plastid
TraesCS4D01G012100.1	plastid
TraesCS4D01G053400.2	plastid
TraesCS4D01G309000.1	plastid
TraesCS6B01G357800.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	TraesCS4A01G411000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4B01G311100.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4D01G309000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4A01G411000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4B01G311100.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4D01G309000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS3A01G151900.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS3B01G179100.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS3D01G159800.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G37000.1	TraesCS6B01G357800.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G37000.1	TraesCS6B01G357800.1	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G009000.1	Wheat	plastid	89.46	89.17
Os10t0389100-01	Rice	endoplasmic reticulum	37.38	69.23
Os10t0389200-01	Rice	plasma membrane	65.5	62.31
Zm00001d030549_P001	Maize	plastid	61.66	58.13
OQU86787	Sorghum	plastid	62.3	51.05
CDX75624	Canola	cytosol	37.7	41.99
GSMUA_Achr9P29140_001	Banana	plastid	41.53	39.39
VIT_07s0031g00680.t01	Wine grape	plastid	39.3	38.2
PGSC0003DMT400048861	Potato	cytosol	32.59	37.36
AT4G37000.1	Thale cress	plastid	37.38	36.68
KRH14207	Soybean	plastid	34.82	33.85
Solyc03g044470.2.1	Tomato	plastid	33.55	33.44
KRH73924	Soybean	plastid	34.5	32.83
Bra011734.1-P	Field mustard	plastid	38.02	24.29
CDX69273	Canola	plastid	38.98	23.19

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009056	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009941
GO:GO:0009987	GO:GO:0010363	GO:GO:0015996	GO:GO:0043067	GO:GO:0051743	PFAM:PF06405
PANTHER:PTHR34685	InterPro:RCC_reductase	EnsemblPlantsGene:TraesCS6A01G006200	EnsemblPlants:TraesCS6A01G006200.1	SEG:seg	:

Description

No Description!

Coordinates

chr6A:-:2273996..2277064

Molecular Weight (calculated)

34019.2 Da

IEP (calculated)

6.673

GRAVY (calculated)

-0.038

Length

313 amino acids

Sequence
(BLAST)

001: MLRPATPLSV AAPTLPTISR LGRGAAPPLR GRRSGTTVRA RMPLEQQQVT LPSLAHREVA RALAAEAAAA VPLLPSAVPV DVADFRNSAG TAVGTLDVRR
101: GEPASSIDFM LHSSLHCKVP NGAIDITSVL IFLNALTDAP HFLMEFIQGS PTSMVVILDL LPRKDLALHP EYLQKYYEHT HLDKQREKIE ELPQTRPYRS
201: PSLFVCSACS PTAVSVTIDC GQGGEGTLEE IVCGHLASAV KEVLQIWLHS CARDTSEMEE AEREIMIKRD QAVRSKSIEV DLTANLPRMF GPDVSGHIIA
301: EIRKAFGVQL QEA

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.