Factsheet for Solyc03g044470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g032660.2.1	plastid
Solyc07g024000.2.1
Solyc11g066440.1.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	Solyc11g066440.1.1	AT3G44880.1	22366162
AT4G37000.1	Solyc11g066440.1.1	AT3G44880.1	22366162
AT4G37000.1	Solyc07g024000.2.1	AT4G13250.1	22366162
AT4G37000.1	Solyc05g032660.2.1	AT5G04900.1	22366162
AT4G37000.1	Solyc05g032660.2.1	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048861	Potato	cytosol	84.08	96.7
VIT_07s0031g00680.t01	Wine grape	plastid	56.37	54.97
KRH73924	Soybean	plastid	53.82	51.37
KRH14207	Soybean	plastid	52.55	51.24
CDX75624	Canola	cytosol	44.27	49.47
AT4G37000.1	Thale cress	plastid	45.22	44.51
GSMUA_Achr9P29140_001	Banana	plastid	44.27	42.12
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	28.03	41.9
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.16	38.16
KXG28420	Sorghum	cytosol	24.84	38.05
HORVU7Hr1G113230.1	Barley	mitochondrion	33.12	36.36
Os10t0389100-01	Rice	endoplasmic reticulum	19.11	35.5
Os10t0389200-01	Rice	plasma membrane	36.62	34.95
Zm00001d030549_P001	Maize	plastid	35.67	33.73
TraesCS6A01G006200.1	Wheat	plastid	33.44	33.55
TraesCS6D01G009000.1	Wheat	plastid	33.44	33.44
EER91980	Sorghum	plastid	32.17	31.76
Os10t0389300-02	Rice	plastid	31.21	30.15
Bra011734.1-P	Field mustard	plastid	45.86	29.39
OQU86787	Sorghum	plastid	34.08	28.01
CDX69273	Canola	plastid	45.54	27.19
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	34.39	23.74

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009941	GO:GO:0009987
GO:GO:0010363	GO:GO:0015996	GO:GO:0043067	GO:GO:0051743	GO:GO:0055114	UniProt:K4BG66
PFAM:PF06405	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2	InterPro:RCC_reductase	EnsemblPlantsGene:Solyc03g044470.2	EnsemblPlants:Solyc03g044470.2.1
UniParc:UPI0002768348	SEG:seg	:	:	:	:

Description

Red chlorophyll catabolite reductase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G37000) UniProtKB/Swiss-Prot;Acc:Q8LDU4]

Coordinates

chr3:+:9341011..9344655

Molecular Weight (calculated)

35179.0 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.159

Length

314 amino acids

Sequence
(BLAST)

001: MAVPLSSAKF HTSILTQSLP SSSSRSFSVG KRFCCSSSST SMEHHESKFK EFPYASVPHR ELMVELVSTV ENRLGESLLP CTLPSHVQYF ENESATAHAS
101: LYVRSGNSSS QVDFILGSWV HCNLPTGGAL NITSLSVYLR PSTDAPNFLI EVIQSSPTTL ILILDLPPRK DLVQHPDYLK TFYEETQLDK QRQLLEKLPE
201: VKPYFSSSLY IRALVSPSAI LVSIETDPSQ AIRIDEIIQD HISPVAKVML DTWLNLCACT ERRLTDDESK DLAKRDQIIK NKTIEIDLES SFPRLFGQQV
301: ANQVLGVLRE IYNS

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.