Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G151900.1 | |
| TraesCS3B01G179100.1 | |
| TraesCS3D01G159800.1 | |
| TraesCS4A01G261200.1 | plastid |
| TraesCS4A01G299400.1 | plastid |
| TraesCS4A01G411000.1 | plastid |
| TraesCS4B01G311100.1 | plastid |
| TraesCS4D01G012100.1 | plastid |
| TraesCS4D01G053400.2 | plastid |
| TraesCS4D01G309000.1 | plastid |
| TraesCS6B01G357800.1 | plastid |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G113230.1 | Barley | mitochondrion | 54.51 | 86.71 |
| TraesCS6D01G008800.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 33.63 | 73.91 |
| Os10t0389200-01 | Rice | plasma membrane | 48.79 | 67.48 |
| TraesCS6D01G009000.1 | Wheat | plastid | 45.93 | 66.56 |
| Os10t0389100-01 | Rice | endoplasmic reticulum | 24.62 | 66.27 |
| Zm00001d030549_P001 | Maize | plastid | 45.05 | 61.75 |
| OQU86787 | Sorghum | plastid | 46.37 | 55.24 |
| CDX75624 | Canola | cytosol | 25.71 | 41.64 |
| GSMUA_Achr9P29140_001 | Banana | plastid | 29.01 | 40.0 |
| PGSC0003DMT400048861 | Potato | cytosol | 23.08 | 38.46 |
| VIT_07s0031g00680.t01 | Wine grape | plastid | 27.03 | 38.2 |
| AT4G37000.1 | Thale cress | plastid | 26.59 | 37.93 |
| KRH14207 | Soybean | plastid | 24.84 | 35.09 |
| Solyc03g044470.2.1 | Tomato | plastid | 23.74 | 34.39 |
| KRH73924 | Soybean | plastid | 24.4 | 33.74 |
| Bra011734.1-P | Field mustard | plastid | 27.25 | 25.31 |
| CDX69273 | Canola | plastid | 27.69 | 23.95 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G492300.1 | EnsemblPlantsGene:TraesCS7D01G492300 | Gene3D:3.40.1500.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0051743 |
| InterPro:RCC_reductase | KEGG:00860+1.3.7.12 | PANTHER:PTHR34685 | PFAM:PF06405 | SEG:seg | MapMan:7.12.6.7.6 |
Description
No Description!
Coordinates
chr7D:+:600972769..600974535
Molecular Weight (calculated)
49108.8 Da
IEP (calculated)
7.970
GRAVY (calculated)
-0.158
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLAAHVCG WNDKYLGWAA EEERGRGEAG ERSAAAMAAL SPVAGLTLVE EEQRRTRESF PPATRKRYPD STARLHAYST PRTRGDSLAF TLPHLPSLPI
101: QWLETAHLCL LLLFHASSLS ARSLAMLLRP EHRLRSPPAT APAPSRASIS VSAPARPAVS RLPRGALRLP RAASPLRGKA SSAVRASAGP AGMPSVAHRE
201: VARAVAGEAE ARLGDRLLPS AVPADVAEFR NGDGTALGSL DVRRGAPGSS IDFMLQSSLH CKVPNGAIDI TSLFINLNAS TDAPHFVMEF IQGSPTSMVV
301: LLDLLPRKDL ALHPEYIEKY YGNTEADKQR KIIEELPQAR PYLSPSLFVR SAFSPTAVFF TIDCGQGGES VLEEIVHGHL ASVVKGLLQI WLGTCAGDTS
401: EVDEGEREIM VKRDRTVRSK SIEVDLTANL PRMFGPDVSG RVIAEIRKAF GVEEA
101: QWLETAHLCL LLLFHASSLS ARSLAMLLRP EHRLRSPPAT APAPSRASIS VSAPARPAVS RLPRGALRLP RAASPLRGKA SSAVRASAGP AGMPSVAHRE
201: VARAVAGEAE ARLGDRLLPS AVPADVAEFR NGDGTALGSL DVRRGAPGSS IDFMLQSSLH CKVPNGAIDI TSLFINLNAS TDAPHFVMEF IQGSPTSMVV
301: LLDLLPRKDL ALHPEYIEKY YGNTEADKQR KIIEELPQAR PYLSPSLFVR SAFSPTAVFF TIDCGQGGES VLEEIVHGHL ASVVKGLLQI WLGTCAGDTS
401: EVDEGEREIM VKRDRTVRSK SIEVDLTANL PRMFGPDVSG RVIAEIRKAF GVEEA
001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL
Arabidopsis Description
RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.