CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95507	plastid
EES02213
KXG33129
KXG37915	plastid
OQU77869

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	EER95507	AT3G44880.1	22366162
AT4G37000.1	EER95507	AT3G44880.1	22366162
AT4G37000.1	EES02213	AT4G13250.1	22366162
AT4G37000.1	KXG33129	AT4G13250.1	22366162
AT4G37000.1	OQU77869	AT4G13250.1	22366162
AT4G37000.1	KXG37915	AT5G04900.1	22366162
AT4G37000.1	KXG37915	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030549_P001	Maize	plastid	74.35	85.54
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.96	70.05
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	37.96	69.05
HORVU7Hr1G113230.1	Barley	mitochondrion	51.05	68.18
Os10t0389200-01	Rice	plasma membrane	55.76	64.74
Os10t0389100-01	Rice	endoplasmic reticulum	28.53	64.5
TraesCS6A01G006200.1	Wheat	plastid	51.05	62.3
TraesCS6D01G009000.1	Wheat	plastid	50.52	61.47
KXG28420	Sorghum	cytosol	28.8	53.66
EER91980	Sorghum	plastid	39.27	47.17
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	55.24	46.37
CDX75624	Canola	cytosol	30.89	41.99
GSMUA_Achr9P29140_001	Banana	plastid	34.29	39.7
AT4G37000.1	Thale cress	plastid	32.72	39.19
PGSC0003DMT400048861	Potato	cytosol	27.49	38.46
VIT_07s0031g00680.t01	Wine grape	plastid	32.2	38.2
Solyc03g044470.2.1	Tomato	plastid	28.01	34.08
KRH14207	Soybean	plastid	28.53	33.85
KRH73924	Soybean	plastid	28.8	33.43
Bra011734.1-P	Field mustard	plastid	32.2	25.1
CDX69273	Canola	plastid	31.94	23.19

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	EntrezGene:8079617	UniProt:A0A1W0VXB7	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0051743	GO:GO:0055114	EnsemblPlants:OQU86787
ProteinID:OQU86787	ProteinID:OQU86787.1	PFAM:PF06405	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2	MetaCyc:PWY-5098
MetaCyc:PWY-6927	InterPro:RCC_reductase	EnsemblPlantsGene:SORBI_3003G146500	unigene:Sbi.8490	UniParc:UPI0009DC8914	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:15106695..15109068

Molecular Weight (calculated)

41807.5 Da

IEP (calculated)

8.138

GRAVY (calculated)

-0.137

Length

382 amino acids

Sequence
(BLAST)

001: MPPWAGRSLS RVNLAVVDPM CIEGEGGLFR PHLTLPIRGR DRLTGISFPS MLRLEQYLRL LPATTHATAP ALISASSSLS YPLPNLSALR LPRSRPPTLR
101: GKTSSAVRAS AGPDATVKRA PEMAQREVAR AVADQAVARL GARLLPSSVP ADVAEFRNGA GNAVGSLDVH RGSPGSSIDF MLQSSLHCKV PNGAIDITSI
201: LIFLNASTNA PHFLLELIQG RSTSIVVILD LLPRKDLAFH PDYLQKYYEE TRMDEQRGKI EELPQTRPYR SPSLFVRSAC SPTAIMVNID CGQGGEKALE
301: EIMHGQLATV IQEVLQIWLD NCADSTTEMD EVERDCLLKR DRIVRSKSIE VDLTANLPRM FGPDVSSRVI TEIRKAFGVQ EP

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.