Factsheet for GSMUA_Achr9P29140_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P03080_001	plastid
GSMUA_Achr4P25150_001	plastid
GSMUA_Achr7P10870_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	GSMUA_Achr4P25150_001	AT3G44880.1	22366162
AT4G37000.1	GSMUA_Achr4P25150_001	AT3G44880.1	22366162
AT4G37000.1	GSMUA_Achr10P...	AT4G13250.1	22366162
AT4G37000.1	GSMUA_Achr7P10870_001	AT4G13250.1	22366162
AT4G37000.1	GSMUA_Achr2P03080_001	AT5G04900.1	22366162
AT4G37000.1	GSMUA_Achr2P03080_001	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.21	49.76
PGSC0003DMT400048861	Potato	cytosol	40.91	49.45
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	30.3	47.62
KXG28420	Sorghum	cytosol	29.39	47.32
HORVU7Hr1G113230.1	Barley	mitochondrion	40.0	46.15
Os10t0389100-01	Rice	endoplasmic reticulum	23.64	46.15
KRH14207	Soybean	plastid	43.94	45.03
Solyc03g044470.2.1	Tomato	plastid	42.12	44.27
VIT_07s0031g00680.t01	Wine grape	plastid	43.03	44.1
KRH73924	Soybean	plastid	43.94	44.07
CDX75624	Canola	cytosol	36.67	43.06
TraesCS6D01G009000.1	Wheat	plastid	40.3	42.36
Os10t0389200-01	Rice	plasma membrane	41.52	41.64
TraesCS6A01G006200.1	Wheat	plastid	39.39	41.53
EER91980	Sorghum	plastid	40.0	41.51
Zm00001d030549_P001	Maize	plastid	40.0	39.76
AT4G37000.1	Thale cress	plastid	37.88	39.19
Os10t0389300-02	Rice	plastid	38.18	38.77
OQU86787	Sorghum	plastid	39.7	34.29
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	40.0	29.01
Bra011734.1-P	Field mustard	plastid	37.88	25.51
CDX69273	Canola	plastid	37.88	23.76

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009941	GO:GO:0009987
GO:GO:0010363	GO:GO:0015996	GO:GO:0043067	GO:GO:0051743	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr9G29140_001
EnsemblPlants:GSMUA_Achr9P29140_001	EnsemblPlants:GSMUA_Achr9T29140_001	UniProt:M0U4H1	PFAM:PF06405	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2
InterPro:RCC_reductase	UniParc:UPI000296B74E	SEG:seg	:	:	:

Description

Red chlorophyll catabolite reductase (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G29140_001]

Coordinates

chr9:+:32891441..32893604

Molecular Weight (calculated)

36558.1 Da

IEP (calculated)

7.437

GRAVY (calculated)

-0.213

Length

330 amino acids

Sequence
(BLAST)

001: MRRSRIQAES ESEMPSLPSS SFLPSPFRLL SSRRPPPRPC SSTAIAGSKR RPNRIRASMS GPPSPVAEFP YLPPSHRDLM LDLRSVVEDR LGPHLLPSAV
101: PPDVLSFHSP SGASRGALDI RSGGRDSPVD FILESWLHCE LPTGALNITT LFAFLDAATD APHLLMEFIQ SSPSSLILFT DLLPRKDLVL HPDYLDEFYQ
201: QTNLDKPRQE LAKLPQVQPY CSSSLYIRSV LSPTAIAVCI NCGEDGQGMM EDIMRGRLDA ICKEIVRIWL DTCASSSKQL GETERANLLR RDGLIKNKTI
301: EIDLAANLPR MFSPDVANRV VGEIQKAFKI

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.