CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13102	plastid
KRH25120	plastid
KRH30552	plastid
KRH39291
KRH48384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	KRH25120	AT3G44880.1	22366162
AT4G37000.1	KRH30552	AT3G44880.1	22366162
AT4G37000.1	KRH25120	AT3G44880.1	22366162
AT4G37000.1	KRH30552	AT3G44880.1	22366162
AT4G37000.1	KRH39291	AT4G13250.1	22366162
AT4G37000.1	KRH48384	AT4G13250.1	22366162
AT4G37000.1	KRH13102	AT5G04900.1	22366162
AT4G37000.1	KRH13102	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73924	Soybean	plastid	87.27	85.41
PGSC0003DMT400048861	Potato	cytosol	51.86	61.17
VIT_07s0031g00680.t01	Wine grape	plastid	59.01	59.01
CDX75624	Canola	cytosol	48.76	55.87
Solyc03g044470.2.1	Tomato	plastid	51.24	52.55
AT4G37000.1	Thale cress	plastid	50.31	50.78
GSMUA_Achr9P29140_001	Banana	plastid	45.03	43.94
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	28.26	43.33
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.71	41.55
Os10t0389100-01	Rice	endoplasmic reticulum	21.43	40.83
KXG28420	Sorghum	cytosol	24.53	38.54
HORVU7Hr1G113230.1	Barley	mitochondrion	33.85	38.11
TraesCS6A01G006200.1	Wheat	plastid	33.85	34.82
TraesCS6D01G009000.1	Wheat	plastid	33.54	34.39
Os10t0389200-01	Rice	plasma membrane	34.78	34.04
Bra011734.1-P	Field mustard	plastid	51.55	33.88
Zm00001d030549_P001	Maize	plastid	34.47	33.43
EER91980	Sorghum	plastid	30.75	31.13
CDX69273	Canola	plastid	50.0	30.61
Os10t0389300-02	Rice	plastid	29.5	29.23
OQU86787	Sorghum	plastid	33.85	28.53
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	35.09	24.84

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6	EMBL:ACUP02008494	EnsemblPlantsGene:GLYMA_14G012500	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015996
GO:GO:0051743	GO:GO:0055114	UniProt:I1M6F0	EnsemblPlants:KRH14207	ProteinID:KRH14207	ProteinID:KRH14207.1
PFAM:PF06405	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2	MetaCyc:PWY-5098	MetaCyc:PWY-6927	InterPro:RCC_reductase
UniParc:UPI000233BDFF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:941248..943606

Molecular Weight (calculated)

36509.4 Da

IEP (calculated)

5.995

GRAVY (calculated)

-0.235

Length

322 amino acids

Sequence
(BLAST)

001: MICEHFRYSP LSFLSFSSPP STRYHLYIPS SSSSSFSVSC SLMENQETHN NQGRSKFMDF PFVSSAQKNL MVDLVSTLEN RFHTQLLPCT LPSDVQYYQS
101: QTATAQASLH IRAAHNDSPI DFVLGSWVHS ELPTGGSLDI TSLSAYLNSS TDAPNFVFEM IRSSPTMLLL ILDLPPRKDL VLWPDDLKTF YEDTQLDKHR
201: QTLERVPEVQ PYFSSSLYIR TVSSPTAIMV RVLTENGGVE RMEEIIRDHL DPISKQVLGI WLDHCACAKR EVGEAERAYL KKRDGLIRNK TIEIDLGSSF
301: PRLFGPEVAN RVLEAIKEYF TV

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.