Factsheet for Bra011734.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005827.1-P	plastid
Bra032697.1-P
Bra034882.1-P
Bra037607.1-P	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	Bra037607.1-P	AT3G44880.1	22366162
AT4G37000.1	Bra037607.1-P	AT3G44880.1	22366162
AT4G37000.1	Bra032697.1-P	AT4G13250.1	22366162
AT4G37000.1	Bra034882.1-P	AT4G13250.1	22366162
AT4G37000.1	Bra005827.1-P	AT5G04900.1	22366162
AT4G37000.1	Bra005827.1-P	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75624	Canola	cytosol	54.69	95.37
AT4G37000.1	Thale cress	plastid	50.61	77.74
KRH14207	Soybean	plastid	33.88	51.55
PGSC0003DMT400048861	Potato	cytosol	28.57	51.28
KRH73924	Soybean	plastid	34.08	50.76
VIT_07s0031g00680.t01	Wine grape	plastid	33.27	50.62
Solyc03g044470.2.1	Tomato	plastid	29.39	45.86
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	18.57	43.33
KXG28420	Sorghum	cytosol	17.76	42.44
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.73	39.61
HORVU7Hr1G113230.1	Barley	mitochondrion	23.06	39.51
TraesCS6A01G006200.1	Wheat	plastid	24.29	38.02
GSMUA_Achr9P29140_001	Banana	plastid	25.51	37.88
Os10t0389100-01	Rice	endoplasmic reticulum	13.06	37.87
Os10t0389200-01	Rice	plasma membrane	24.69	36.78
Zm00001d030549_P001	Maize	plastid	24.69	36.45
TraesCS6D01G009000.1	Wheat	plastid	23.27	36.31
EER91980	Sorghum	plastid	22.24	34.28
OQU86787	Sorghum	plastid	25.1	32.2
Os10t0389300-02	Rice	plastid	20.41	30.77
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	25.31	27.25

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:1.10.238.10	MapMan:14.6.1.1	MapMan:16.11.2.3	Gene3D:3.40.1500.20	MapMan:7.12.6.7.6
EnsemblPlantsGene:Bra011734	EnsemblPlants:Bra011734.1	EnsemblPlants:Bra011734.1-P	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152
GO:GO:0051743	GO:GO:0055114	InterPro:IPR002048	UniProt:M4D5H7	PFAM:PF06405	PFAM:PF13499
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2	InterPro:RCC_reductase	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI00025467E1	SEG:seg	:	:	:

Description

AT4G37000 (E=6e-135) ACD2, ATRCCR | ACD2 (ACCELERATED CELL DEATH 2); red chlorophyll catabolite reductase

Coordinates

chrA01:+:830085..832781

Molecular Weight (calculated)

55983.5 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.514

Length

490 amino acids

Sequence
(BLAST)

001: MAMIFCNTLY SSSPFLSPVP PIRSKPSRFS NRLTVQAQFQ SMENQNDLLL RQKFMEFPYV SPTRRELMVD LMSTLEDRLH SQLLPCTLPP DVRNFKNPNG
101: SAEASLHIRS GEQSSPIDFV IGSWIHVKIP TGVSLNITSI SGFLNSSTEA PNFVVELIQS SPTSLVLILD LPHRKDLVRH PDYLQTFYQD TALDTHRQSL
201: LKLPEIKPYD SPSLFVRSAF SPTASMLKID AEEGERLEEI LRDHVSPAAT QVLEVWLERC AKEEGEKRVV GEEEKLELER RDKSFRRKSI EEDLDLQFPR
301: MFGDEVSSRV IHAIKEAFGA SFASGAAQFR RGLKTKGKTY GLTNQKRREI REIFDLFDID GSGSIDAREL NVAMRSLGFE MTNEQINELM AEVDKNNSGT
401: IDFEEFVHMM TTKFGERDSK DELSKAFKII DHDNNGKISP HDIKQIAKEL GENFTDNEIE EMIEEADRDK DGEVSLEEFM KMMRRTSYGY

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.