Factsheet for Os10t0389200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0227100-01
Os03t0146400-01	plastid
Os03t0654600-01	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	Os03t0146400-01	AT3G44880.1	22366162
AT4G37000.1	Os03t0146400-01	AT3G44880.1	22366162
AT4G37000.1	Os01t0227100-01	AT4G13250.1	22366162
AT4G37000.1	Os03t0654600-01	AT5G04900.1	22366162
AT4G37000.1	Os03t0654600-01	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0389100-01	Rice	endoplasmic reticulum	42.86	83.43
TraesCS6B01G011700.1	Wheat	cytosol, extracellular	46.5	72.86
HORVU7Hr1G113230.1	Barley	mitochondrion	62.92	72.38
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.68	71.01
TraesCS6A01G006200.1	Wheat	plastid	62.31	65.5
Zm00001d030549_P001	Maize	plastid	64.44	63.86
TraesCS6D01G009000.1	Wheat	plastid	60.49	63.38
OQU86787	Sorghum	plastid	64.74	55.76
Os10t0389300-02	Rice	plastid	48.94	49.54
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	67.48	48.79
GSMUA_Achr9P29140_001	Banana	plastid	41.64	41.52
CDX75624	Canola	cytosol	34.65	40.57
PGSC0003DMT400048861	Potato	cytosol	33.43	40.29
VIT_07s0031g00680.t01	Wine grape	plastid	37.69	38.51
AT4G37000.1	Thale cress	plastid	37.08	38.24
Solyc03g044470.2.1	Tomato	plastid	34.95	36.62
KRH14207	Soybean	plastid	34.04	34.78
KRH73924	Soybean	plastid	34.04	34.04
Bra011734.1-P	Field mustard	plastid	36.78	24.69
CDX69273	Canola	plastid	35.87	22.43

Protein Annotations

KEGG:00860+1.3.7.12	Gene3D:3.40.1500.20	EntrezGene:4348519	MapMan:7.12.6.7.6	ProteinID:ABB47486.1	ProteinID:BAT10653.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0015996	GO:GO:0051743	GO:GO:0055114	EMBL:JN604886	EnsemblPlantsGene:Os10g0389200	EnsemblPlants:Os10t0389200-01
PFAM:PF06405	PANTHER:PTHR34685	PANTHER:PTHR34685:SF2	UniProt:Q338P6	InterPro:RCC_reductase	UniParc:UPI00005E1E12
RefSeq:XP_015614206.1	SEG:seg	:	:	:	:

Description

RED CHLOROPHYLL CATABOLITE REDUCTASE 1Red chlorophyll catabolite reductase, Leaf senescence, Wound responses (Os10t0389200-01)

Coordinates

chr10:-:12886331..12888289

Molecular Weight (calculated)

35552.7 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.148

Length

329 amino acids

Sequence
(BLAST)

001: MLQLRSPPPA TSSPSSAVSF PTLAPRLLPL RRRRRGAGSQ LGGKTSSAVR ASSAAAPGAT EPEVMVEVAH REVARALASL AEARLGARLL PSAVPPDVAE
101: FRSGGGAGNA VGSLDVRRGA PGSTIDFMLQ SSLHCKVPNG AIDITSLLIF LNASTDAPHF LMEFIQGSPT SIVVLLDLLP RKDLALHPEY IERYYENTQV
201: DKQREKVEEL PQARPYRSRS LFVRSTFSLT AILMSIDCGQ GGEGTLEEIV RGQLATAARA LLQIWLDSCA DHTSEMEEGE RENMIKRDQI VRSKSIEVDL
301: TSNLPRMFGP DVADRVIAEI QKAFGVQEA

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.