Factsheet for TraesCS6D01G009000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G151900.1
TraesCS3B01G179100.1
TraesCS3D01G159800.1
TraesCS4A01G261200.1	plastid
TraesCS4A01G299400.1	plastid
TraesCS4A01G411000.1	plastid
TraesCS4B01G311100.1	plastid
TraesCS4D01G012100.1	plastid
TraesCS4D01G053400.2	plastid
TraesCS4D01G309000.1	plastid
TraesCS6B01G357800.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37000.1	TraesCS4A01G411000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4B01G311100.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4D01G309000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4A01G411000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4B01G311100.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS4D01G309000.1	AT3G44880.1	22366162
AT4G37000.1	TraesCS3A01G151900.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS3B01G179100.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS3D01G159800.1	AT4G13250.1	22366162
AT4G37000.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G37000.1	TraesCS6B01G357800.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G261200.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4A01G299400.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G012100.1	AT5G04900.1	22366162
AT4G37000.1	TraesCS4D01G053400.2	AT5G04900.1	22366162
AT4G37000.1	TraesCS6B01G357800.1	AT5G04900.1	22366162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G008800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.19	91.3
TraesCS6A01G006200.1	Wheat	plastid	89.17	89.46
Os10t0389100-01	Rice	endoplasmic reticulum	36.94	68.64
Os10t0389200-01	Rice	plasma membrane	63.38	60.49
Zm00001d030549_P001	Maize	plastid	61.47	58.13
OQU86787	Sorghum	plastid	61.47	50.52
TraesCS7D01G492300.1	Wheat	cytosol, nucleus, plastid	66.56	45.93
CDX75624	Canola	cytosol	37.26	41.64
GSMUA_Achr9P29140_001	Banana	plastid	42.36	40.3
PGSC0003DMT400048861	Potato	cytosol	32.48	37.36
AT4G37000.1	Thale cress	plastid	36.94	36.36
VIT_07s0031g00680.t01	Wine grape	plastid	36.62	35.71
KRH14207	Soybean	plastid	34.39	33.54
Solyc03g044470.2.1	Tomato	plastid	33.44	33.44
KRH73924	Soybean	plastid	34.71	33.13
Bra011734.1-P	Field mustard	plastid	36.31	23.27
CDX69273	Canola	plastid	37.9	22.62

Protein Annotations

EnsemblPlants:TraesCS6D01G009000.1	EnsemblPlantsGene:TraesCS6D01G009000	Gene3D:3.40.1500.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0051743
InterPro:RCC_reductase	KEGG:00860+1.3.7.12	ncoils:Coil	PANTHER:PTHR34685	PFAM:PF06405	SEG:seg
MapMan:7.12.6.7.6	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:3488636..3491676

Molecular Weight (calculated)

34076.3 Da

IEP (calculated)

6.665

GRAVY (calculated)

0.043

Length

314 amino acids

Sequence
(BLAST)

001: MLRPATCVSV AAPSLPTISR LRCGTAPPLR GRRSSTTVRA CMPLVQQEVT LPSTLAHREV AQALAAEAAA AVPLLPSAVP ADVADFRNSA GTAVGTLDLR
101: RGAPASSIDF MLHSSLHCKV PNGAIDITSV LIFLNALTDA PHFLMEFIQG SPTSMVVILD LLPRKDLALH PEYLHKYYEH TCLDKQREKI EELPQTRPYR
201: SPSLFVRSAC SPTAVSVTID CGQGGEGTLE EIVCGHLASA VKEVLQIWLH SCARDTSEME EAEREIMIKR DQAVRLKSIE VDLTANLPRM FGPDVSGHII
301: AEIRKAFGVQ LQEA

Best Arabidopsis Sequence Match ( AT4G37000.1 )
(BLAST)

001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL

Arabidopsis Description

RCCRRed chlorophyll catabolite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.