Factsheet for TraesCS4D01G309000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G311100.1	Wheat	golgi	96.23	97.51
TraesCS4A01G411000.1	Wheat	plastid	96.6	95.88
HORVU4Hr1G079330.1	Barley	plastid	95.28	94.22
HORVU4Hr1G079260.2	Barley	peroxisome	83.96	90.26
Os03t0146400-01	Rice	plastid	85.09	85.26
EER95507	Sorghum	plastid	83.77	84.73
Zm00001d027656_P001	Maize	plastid	82.64	84.23
VIT_06s0061g00790.t01	Wine grape	plastid	69.43	68.27
KRH30552	Soybean	plastid	69.62	67.71
GSMUA_Achr4P25150_001	Banana	nucleus	70.57	67.63
Solyc11g066440.1.1	Tomato	plastid	68.49	67.6
CDY29727	Canola	plastid	67.92	67.42
Bra037607.1-P	Field mustard	plastid	67.92	67.16
AT3G44880.1	Thale cress	plastid	67.92	67.04
PGSC0003DMT400001216	Potato	plastid	68.3	65.94
KRH25120	Soybean	plastid	69.06	65.01
CDY20340	Canola	plastid	68.3	63.29
TraesCS7D01G137200.1	Wheat	golgi	30.75	31.23
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	29.25	30.27
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	30.38	30.21
TraesCS6D01G336000.1	Wheat	golgi	24.53	23.99
TraesCS3D01G514100.1	Wheat	mitochondrion	14.53	14.0

Protein Annotations

Gene3D:2.102.10.10	MapMan:7.12.6.7.5	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009056	GO:GO:0009507	GO:GO:0009534
GO:GO:0009536	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009816
GO:GO:0009908	GO:GO:0009941	GO:GO:0009987	GO:GO:0010154	GO:GO:0010277	GO:GO:0015996
GO:GO:0016491	GO:GO:0032441	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922
PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF24	InterPro:PaO
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	EnsemblPlantsGene:TraesCS4D01G309000	EnsemblPlants:TraesCS4D01G309000.1
TIGR:cd03480	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:477013532..477016754

Molecular Weight (calculated)

59230.3 Da

IEP (calculated)

8.737

GRAVY (calculated)

-0.368

Length

530 amino acids

Sequence
(BLAST)

001: MPSASLPLLS PRHRPLLRPS TLPASRLGSG LLRPRRGRAG STRLRVAAPT SVPGEAERAE EPTTSASTSP ESPGEKFVWR DHWYPVSLVE DLDPRVPTPF
101: QLLNRDLVIW NDPNSGEWVA LDDRCPHRLA PLSEGRIDET GGLQCSYHGW SFDGSGACTR IPQAAPKGPE ARAVRSPRAC ATKFPTLLSQ GLLFVWPDEN
201: GWDKAKATKP PMLPKEFDDP AFSTVTIQRD LFYGYDTLME NVSDPSHIEF AHHKVTGRRD RAKPLPFKME SSGAWGYSGA NTGNPRITAT FEAPCYALNK
301: IEIDTKLPIV GDQKWVIWIC SFNIPMAPGK TRSIVCSARN FFQFTMPGKA WWQFVPRWYE HWTSNLVYDG DMIVLQGQEK VFLSASKESS ADVNQQYTKL
401: TFTPTQADRF VLAFRAWLRK FGNSQPDWYG SPSQDALPST VLSKREMLDR YEQHTLKCSS CRGAHKAFQT LQKVFMGATV VFGATSGIPA DVQLRILLGA
501: GALVSAALAY VFYDRQKHFV FVDYVHADID

Best Arabidopsis Sequence Match ( AT3G44880.1 )
(BLAST)

001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

Arabidopsis Description

PAOPheophorbide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.