Factsheet for TraesCS5D01G466600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:

plastid 4
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G455800.1	Wheat	plastid	94.53	88.64
TraesCS5B01G464800.1	Wheat	cytosol	49.8	87.93
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	87.89	84.43
Os03t0805600-00	Rice	extracellular, mitochondrion	26.95	67.32
Zm00001d034523_P001	Maize	plastid	68.36	66.67
EER93253	Sorghum	plastid	68.16	66.48
TraesCS7D01G137200.1	Wheat	golgi	66.6	65.33
Os03t0805700-00	Rice	mitochondrion	65.43	62.97
Zm00001d002582_P001	Maize	peroxisome	25.0	59.81
KXG37317	Sorghum	plastid	60.94	59.2
Os03t0805900-00	Rice	plastid	30.66	56.07
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	14.65	55.97
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	23.83	52.81
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.31	50.11
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	41.21	48.28
Os03t0806300-00	Rice	peroxisome	53.32	47.56
KRH42827	Soybean	mitochondrion	13.28	47.22
KRH58922	Soybean	plastid	48.05	46.5
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	46.29	45.32
KRH42828	Soybean	plastid	46.09	44.44
VIT_06s0004g00660.t01	Wine grape	cytosol	6.84	44.3
Bra013907.1-P	Field mustard	plastid	44.73	42.88
CDX89405	Canola	plastid	44.73	42.88
CDX94430	Canola	plastid	44.34	42.43
Zm00001d035045_P001	Maize	plastid	12.7	42.21
PGSC0003DMT400027602	Potato	plastid	44.14	41.62
AT4G25650.2	Thale cress	plastid	44.92	41.14
Solyc04g040160.2.1	Tomato	plastid	43.16	40.62
VIT_06s0004g00630.t01	Wine grape	cytosol	8.59	39.64
Zm00001d011533_P001	Maize	plastid	23.44	29.85
TraesCS4D01G309000.1	Wheat	mitochondrion	30.27	29.25
TraesCS6D01G336000.1	Wheat	golgi	22.85	21.59
KRH05339	Soybean	cytosol	5.08	18.84
TraesCS3D01G514100.1	Wheat	mitochondrion	13.48	12.55

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS5D01G466600	EnsemblPlants:TraesCS5D01G466600.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:-:509020296..509022491

Molecular Weight (calculated)

57312.7 Da

IEP (calculated)

8.728

GRAVY (calculated)

-0.193

Length

512 amino acids

Sequence
(BLAST)

001: MNSLSILLFP RARPSLPLPL RAAAPATSST RAAAPAPRRW RQRAPLPSPV SAVAAEAPSA ASPFGAEAEK EKEERQFDWL DQWYPLAPVC DLDPGAPHGK
101: TVLGLRVVAW YDRAVDEWRV FDDACPHRLA PLSEGRIDDK GRLQCVYHGW CFDGRGSCQF IPQAPALGPP VHKNSKACVA SYPSVVQNNI LWFYPRADGE
201: HQDILQRKRP PFIPEIDDPS FVAVYGVRDL PYGVEFDIEG GGPIKMKTKE ANVDGFLTEQ QENRGYFRYV APCTFYGSPL PREVAPFAVD DSPLPTEATE
301: EKKKKKPQFM MVFMCVPVAP GKSRVIWAFP RNVGLWLDKI IPRWYYHMGP NALLDSDMYL LHVEERNFAA AGVQNWHKAV YVPTSSDNMV IAFRNWFRKH
401: CRSQVGWAVP TADQLPATPT KDKLMERYWS HVAQCRSCSA ALKAMKALEV ALQFASVAVV GFLAVAKGTL VTSVVQRAAV VSLAVLCFAA SRWLASFIEK
501: NFYFHDYVHA YK

Best Arabidopsis Sequence Match ( AT3G44880.1 )
(BLAST)

001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

Arabidopsis Description

PAOPheophorbide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.