Factsheet for PGSC0003DMT400027602

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g040160.2.1	Tomato	plastid	95.21	95.04
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	31.49	74.03
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	53.59	62.85
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	47.51	59.04
Bra013907.1-P	Field mustard	plastid	56.35	57.3
CDX89405	Canola	plastid	56.35	57.3
CDX94430	Canola	plastid	56.17	57.01
AT4G25650.2	Thale cress	plastid	56.72	55.1
VIT_06s0004g00660.t01	Wine grape	cytosol	7.92	54.43
VIT_06s0004g00630.t01	Wine grape	cytosol	10.31	50.45
Zm00001d034523_P001	Maize	plastid	45.67	47.24
EER93253	Sorghum	plastid	45.49	47.05
Os03t0805900-00	Rice	plastid	24.13	46.79
Zm00001d002582_P001	Maize	peroxisome	18.42	46.73
TraesCS7B01G038300.1	Wheat	golgi	44.75	46.55
TraesCS7D01G137200.1	Wheat	golgi	44.01	45.79
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	44.94	45.78
TraesCS5B01G465000.1	Wheat	golgi	44.38	45.39
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	44.01	45.01
TraesCS5B01G464800.1	Wheat	cytosol	23.76	44.48
TraesCS7B01G038100.1	Wheat	mitochondrion	40.15	44.4
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	41.62	44.14
TraesCS5A01G455800.1	Wheat	plastid	44.2	43.96
Os03t0805700-00	Rice	mitochondrion	42.91	43.8
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	44.38	43.27
KXG37317	Sorghum	plastid	41.44	42.69
HORVU5Hr1G109470.1	Barley	plastid	44.2	42.33
TraesCS7A01G137000.1	Wheat	plastid	44.2	42.03
Os03t0805600-00	Rice	extracellular, mitochondrion	14.36	38.05
Os03t0806300-00	Rice	peroxisome	39.41	37.28
EER90694	Sorghum	cytosol	17.86	32.99
Zm00001d035045_P001	Maize	plastid	8.84	31.17
PGSC0003DMT400001216	Potato	plastid	27.99	27.69
Zm00001d011533_P001	Maize	plastid	18.97	25.62
PGSC0003DMT400075266	Potato	plastid	22.65	22.4
PGSC0003DMT400045302	Potato	plastid	14.18	14.39
PGSC0003DMT400002345	Potato	plastid	13.81	14.02

Protein Annotations

EntrezGene:102597185	Gene3D:2.102.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	UniProt:M1APW9
PFAM:PF00355	PFAM:PF08417	EnsemblPlantsGene:PGSC0003DMG400010641	PGSC:PGSC0003DMG400010641	EnsemblPlants:PGSC0003DMT400027602	PFscan:PS51296
PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022
SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI000296E39B	RefSeq:XP_006364436.1	:	:

Description

Pheophorbide A oxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400010641]

Coordinates

chr4:+:12425357..12430425

Molecular Weight (calculated)

61981.9 Da

IEP (calculated)

8.298

GRAVY (calculated)

-0.310

Length

543 amino acids

Sequence
(BLAST)

001: MQTIKASSFS PFHLNLNSTS SFPKITNLYI QQNYENPISC FPSIQSQNAK FKVFTAISPS VSTESETPFD ERTENENQEE KFEWYAEWYP IMPICDLDKR
101: RPHGKKVMGI DVVVWWDKNE KEWKVMDDSC PHRYAPLSEG RIDQWGRLQC VYHGWCFNGA GDCKFIPQAP RDGPPVHTSK RACATVYPSC VQNDILWFWP
201: NSDPLYKDIY LTKRPPYIPE LDDSSFSKTF IVRDISYGYE LLIENLMDPA HVQYSHYGIM NVPVAPKSVK ADREGGRPLD ITVTKLDVNV ITANQGPGRN
301: TFVPPCVYYS YFAFGGPQGK TSAVSSGTVQ EKPSAEKQKK ALLVFICIPV SPGHSRIIFA SPRNFATWAD RIIPRWIFHL GQNLILDSDL YLLHVEERKL
401: KEIGSYNWHK ACYVPTKADA IVVAFRRWLN KYAGGQVDWR GKYNGDLPPT PPREQLLDRY WTHTVNCTSC NLAYKGLNAL EVVLQIASIG VLGIVAAAKQ
501: GTLSVVARYS LVTIALLCFV ASRWLSHFIY KNFHFHDYDH AFR

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.