CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00660.t01	Wine grape	cytosol	11.56	43.04
KRH42827	Soybean	mitochondrion	18.71	38.19
VIT_06s0004g00630.t01	Wine grape	cytosol	14.29	37.84
EER93253	Sorghum	plastid	49.32	27.62
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	39.8	26.77
KXG37317	Sorghum	plastid	46.94	26.19
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	35.37	22.46
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	38.44	21.61
Bra013907.1-P	Field mustard	plastid	37.41	20.6
CDX89405	Canola	plastid	37.41	20.6
CDX94430	Canola	plastid	37.07	20.37
KRH58922	Soybean	plastid	36.05	20.04
KRH42828	Soybean	plastid	36.05	19.96
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	15.65	19.91
AT4G25650.2	Thale cress	plastid	36.39	19.14
PGSC0003DMT400027602	Potato	plastid	32.99	17.86
Solyc04g040160.2.1	Tomato	plastid	32.99	17.83
KRH05339	Soybean	cytosol	7.14	15.22
EER95507	Sorghum	plastid	21.77	12.21
EES05942	Sorghum	plastid	17.35	9.48
EES04263	Sorghum	cytosol	9.18	4.98
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	1.36	2.99

Protein Annotations

MapMan:35.1	UniProt:C5WW65	EnsemblPlants:EER90694	ProteinID:EER90694	ProteinID:EER90694.3	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010277	GO:GO:0019538
GO:GO:0055114	PFAM:PF08417	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO	EnsemblPlantsGene:SORBI_3001G048500
SUPFAM:SSF55961	unigene:Sbi.13445	UniParc:UPI000B8BA5CB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:3547029..3548037

Molecular Weight (calculated)

32884.8 Da

IEP (calculated)

10.179

GRAVY (calculated)

0.006

Length

294 amino acids

Sequence
(BLAST)

001: MKLKIEEASI DGFLASMERG HWKFMAPCTF HSSGTSQQEE GASVHARRLL HPGGSLGPGR SRLIWAFPRN FGVWLDMVVP RWVYHIAQNR VLDSDAYILH
101: VEVATEMSER STMHASLTCC IQYISVNSNM LELQERKFAA MGLENWQSRC YVPASSDAMV VAFRRWFRKH SKNQPGGLPP TATKDRLMER YWSHVAQCAS
201: CSAALRAMRA AEAALQVASV AAVGFLAVAR ESALLASSPA RRAVLVCAAV LCFAASRWLA GFIQSNFFFQ PSRITRMLTS DVTRFRRTGI LRFC

Best Arabidopsis Sequence Match ( AT4G25650.2 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKGKYIICI SNSCFNPFTN LQILLAEKID REGGKPLEIN
301: VKKLDNKGFF SKQEWGYSNF IAPCVYRSST DPLPEQEHEY PAPAASDKAA LSKRRLSLIF ICIPVSPGRS RLIWTFPRNF GVFIDKIVPR WVFHIGQNTI
401: LDSDLHLLHV EERKILERGP ENWQKACFIP TKSDANVVTF RRWFNKYSEA RVDWRGKFDP FLLPPTPPRE QLFDRYWSHV ENCSSCKKAH KYLNALEVIL
501: QIASVAMIGV MAVLKQTTMS NVARIAVLVA AVLSFAASKW LSHFIYKTFH YHDYNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.