Factsheet for Solyc04g040160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027602	Potato	plastid	95.04	95.21
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	17.46	70.9
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	52.39	61.56
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	48.35	60.18
CDX94430	Canola	plastid	55.7	56.64
Bra013907.1-P	Field mustard	plastid	55.51	56.55
CDX89405	Canola	plastid	55.51	56.55
AT4G25650.2	Thale cress	plastid	56.07	54.56
VIT_06s0004g00660.t01	Wine grape	cytosol	7.9	54.43
VIT_06s0004g00630.t01	Wine grape	cytosol	10.48	51.35
Zm00001d002582_P001	Maize	peroxisome	18.57	47.2
Zm00001d034523_P001	Maize	plastid	44.85	46.48
EER93253	Sorghum	plastid	44.85	46.48
Os03t0805900-00	Rice	plastid	23.71	46.07
TraesCS7B01G038300.1	Wheat	golgi	43.38	45.21
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	43.75	44.65
TraesCS7D01G137200.1	Wheat	golgi	42.83	44.64
TraesCS5B01G465000.1	Wheat	golgi	43.38	44.44
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	43.01	44.07
TraesCS5B01G464800.1	Wheat	cytosol	23.16	43.45
Os03t0805700-00	Rice	mitochondrion	42.28	43.23
TraesCS5A01G455800.1	Wheat	plastid	43.38	43.22
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	40.62	43.16
TraesCS7B01G038100.1	Wheat	mitochondrion	38.79	42.97
KXG37317	Sorghum	plastid	40.99	42.31
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	43.2	42.19
HORVU5Hr1G109470.1	Barley	plastid	43.2	41.45
TraesCS7A01G137000.1	Wheat	plastid	42.83	40.81
Os03t0805600-00	Rice	extracellular, mitochondrion	14.15	37.56
Os03t0806300-00	Rice	peroxisome	38.42	36.41
EER90694	Sorghum	cytosol	17.83	32.99
Zm00001d035045_P001	Maize	plastid	8.82	31.17
Solyc11g066440.1.1	Tomato	plastid	27.39	27.75
Zm00001d011533_P001	Maize	plastid	19.12	25.87
Solyc04g024920.1.1	Tomato	extracellular	3.31	23.08
Solyc12g096550.1.1	Tomato	plastid	21.88	21.79
Solyc06g060310.2.1	Tomato	golgi	13.97	14.21
Solyc11g012850.1.1	Tomato	plastid	13.79	14.02

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	UniProt:K4BRF4	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961
EnsemblPlantsGene:Solyc04g040160.2	EnsemblPlants:Solyc04g040160.2.1	UniParc:UPI0002766206	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:11970986..11976110

Molecular Weight (calculated)

62201.1 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.302

Length

544 amino acids

Sequence
(BLAST)

001: MQAVKASSFS PFHLNLNSTS SFPKTTNLYI QQNYENPISC FPSIQTQNAK FKVFTATSPS VSTESETPFD EKTENENQEE KFEWYAEWYP IMPICDLDKR
101: RPHGKKVMGI DVVVWWDRNE KEWKVMDDSC PHRYAPLSEG RIDQWGRLQC VYHGWCFNGA GDCKLIPQAP RDGPQVHTSK RACATVYPSC VQNDILWFWP
201: NSDPLYKDIY LMKRPPYIPE LDDSSFSKTF IVRDISYGYE LLIENLMDPA HVQYSHYGIM NVPVNCLFTV KADREGGRPL DITITKLDVN VITANQGPGR
301: NTFVPPCVYY SYFAFGGSQG KTTAVSSGTV QEKPSAEKQK KALLVFICIP VSPGHSRIIF ASPRNFATWA DRIIPRWIFH LGQNLILDSD LYLLHVEERK
401: LKEIGSYNWH KACYVPTKAD AIVVAFRRWL NKYAGGQVDW RGKYNGDLPP TPPREQLLDR YWTHTVSCTS CNLAYKSLNA LEVVLQIVSI GAIGIVAALK
501: QGTLSAVTRY SLVTVALLCF VASRWLSHFI YKNFHFHDYD HAFR

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.