Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- peroxisome 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0805900-00 | Rice | plastid | 57.46 | 27.5 |
| Zm00001d002582_P001 | Maize | peroxisome | 41.04 | 25.7 |
| Zm00001d035045_P001 | Maize | plastid | 23.88 | 20.78 |
| Solyc04g040160.2.1 | Tomato | plastid | 70.9 | 17.46 |
| VIT_06s0004g00610.t01 | Wine grape | cytosol, plastid | 67.16 | 17.21 |
| Bra013907.1-P | Field mustard | plastid | 64.18 | 16.1 |
| CDX89405 | Canola | plastid | 64.18 | 16.1 |
| AT4G25650.2 | Thale cress | plastid | 67.16 | 16.1 |
| CDX94430 | Canola | plastid | 64.18 | 16.07 |
| GSMUA_Achr2P12380_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 52.24 | 16.02 |
| EER93253 | Sorghum | plastid | 61.94 | 15.81 |
| Zm00001d034523_P001 | Maize | plastid | 60.45 | 15.43 |
| Os03t0805600-00 | Rice | extracellular, mitochondrion | 23.13 | 15.12 |
| Os03t0805700-00 | Rice | mitochondrion | 59.7 | 15.04 |
| TraesCS7B01G038300.1 | Wheat | golgi | 58.21 | 14.94 |
| TraesCS7B01G038100.1 | Wheat | mitochondrion | 54.48 | 14.87 |
| TraesCS7D01G137200.1 | Wheat | golgi | 57.46 | 14.75 |
| TraesCS5D01G466600.1 | Wheat | mitochondrion, plasma membrane, plastid | 55.97 | 14.65 |
| TraesCS5B01G465000.1 | Wheat | golgi | 57.46 | 14.5 |
| TraesCS5D01G466800.3 | Wheat | mitochondrion, plasma membrane, plastid | 57.46 | 14.45 |
| KXG37317 | Sorghum | plastid | 55.97 | 14.23 |
| HORVU7Hr1G028370.3 | Barley | mitochondrion, peroxisome, plasma membrane | 58.21 | 14.0 |
| TraesCS5A01G456000.1 | Wheat | plasma membrane, plastid | 55.22 | 13.94 |
| TraesCS5A01G455800.1 | Wheat | plastid | 55.97 | 13.74 |
| TraesCS7A01G137000.1 | Wheat | plastid | 57.46 | 13.49 |
| Os03t0806300-00 | Rice | peroxisome | 57.46 | 13.41 |
| HORVU5Hr1G109470.1 | Barley | plastid | 56.72 | 13.4 |
| Solyc11g066440.1.1 | Tomato | plastid | 36.57 | 9.12 |
| Solyc04g024920.1.1 | Tomato | extracellular | 5.22 | 8.97 |
| Zm00001d011533_P001 | Maize | plastid | 24.63 | 8.21 |
| Solyc12g096550.1.1 | Tomato | plastid | 29.85 | 7.33 |
| Solyc11g012850.1.1 | Tomato | plastid | 22.39 | 5.61 |
| Solyc06g060310.2.1 | Tomato | golgi | 22.39 | 5.61 |
| TraesCS5B01G464800.1 | Wheat | cytosol | 4.48 | 2.07 |
| EER90694 | Sorghum | cytosol | 2.99 | 1.36 |
| KRH05339 | Soybean | cytosol | 0.75 | 0.72 |
Protein Annotations
| EnsemblPlants:Solyc04g039870.1.1 | EnsemblPlantsGene:Solyc04g039870.1 | Gene3D:2.102.10.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0051537 | GO:GO:0055114 | InterPro:IPR017941 |
| InterPro:IPR036922 | InterPro:Rieske_2Fe-2S | InterPro:Rieske_2Fe-2S_sf | PANTHER:PTHR21266 | PANTHER:PTHR21266:SF38 | PFAM:PF00355 |
| PFscan:PS51296 | SUPFAM:SSF50022 | UniParc:UPI0002766013 | UniProt:K4BRC5 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4:-:12453390..12455815
Molecular Weight (calculated)
15601.9 Da
IEP (calculated)
8.501
GRAVY (calculated)
-0.475
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPTETHMPL NELDKRRPHG KKVMGIDLVV WWDKNLEEWR VVDDACSHRL APLSQGRSDQ WGRLQCVHHG WCFSGYGDCK FIPQAPRDKP PVHISKRACV
101: AVYPCFVQND IICFCPLYKD IHWSKTPPCI RTFR
101: AVYPCFVQND IICFCPLYKD IHWSKTPPCI RTFR
001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV
Arabidopsis Description
PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.