Factsheet for Zm00001d011533_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
peroxisome 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035045_P001	Maize	plastid	22.89	59.74
Zm00001d002582_P001	Maize	peroxisome	30.85	57.94
Os03t0805900-00	Rice	plastid	23.13	33.21
Os03t0805600-00	Rice	extracellular, mitochondrion	15.92	31.22
Zm00001d034523_P001	Maize	plastid	38.81	29.71
EER93253	Sorghum	plastid	36.57	28.0
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	34.58	26.18
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	34.33	25.89
TraesCS5A01G455800.1	Wheat	plastid	35.07	25.82
TraesCS5B01G465000.1	Wheat	golgi	34.08	25.8
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	8.21	24.63
TraesCS7D01G137200.1	Wheat	golgi	31.84	24.52
HORVU5Hr1G109470.1	Barley	plastid	34.08	24.16
Os03t0805700-00	Rice	mitochondrion	31.59	23.87
TraesCS7B01G038300.1	Wheat	golgi	30.6	23.56
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	29.85	23.44
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	31.09	22.44
TraesCS7A01G137000.1	Wheat	plastid	31.59	22.24
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	25.37	22.03
KRH58922	Soybean	plastid	28.36	21.55
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	27.36	21.03
KRH42828	Soybean	plastid	27.61	20.9
TraesCS7B01G038100.1	Wheat	mitochondrion	25.12	20.57
Bra013907.1-P	Field mustard	plastid	26.87	20.22
CDX89405	Canola	plastid	26.87	20.22
CDX94430	Canola	plastid	26.12	19.63
AT4G25650.2	Thale cress	plastid	27.11	19.5
Solyc04g040160.2.1	Tomato	plastid	25.87	19.12
PGSC0003DMT400027602	Potato	plastid	25.62	18.97
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	19.9	18.31
Zm00001d027656_P001	Maize	plastid	23.38	18.08
Os03t0806300-00	Rice	peroxisome	25.62	17.94
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	9.45	16.45
Zm00001d018358_P001	Maize	plastid	19.4	14.5
KRH05339	Soybean	cytosol	4.98	14.49
TraesCS5B01G464800.1	Wheat	cytosol	9.2	12.76
Zm00001d011819_P001	Maize	plastid	13.93	10.33
Zm00001d042026_P001	Maize	cytosol	12.94	10.26
Zm00001d004531_P001	Maize	extracellular, plastid	6.97	10.18
VIT_06s0004g00630.t01	Wine grape	cytosol	2.49	9.01
KRH42827	Soybean	mitochondrion	2.99	8.33
VIT_06s0004g00660.t01	Wine grape	cytosol	1.49	7.59

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	UniProt:A0A1D6G109	ProteinID:AQK97139.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	SUPFAM:SSF56672	UniParc:UPI0008440855	EnsemblPlantsGene:Zm00001d011533
EnsemblPlants:Zm00001d011533_P001	EnsemblPlants:Zm00001d011533_T001	SEG:seg	:	:	:

Description

Protochlorophyllide-dependent translocon component 52 chloroplastic

Coordinates

chr8:-:153698575..153703961

Molecular Weight (calculated)

45405.7 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.549

Length

402 amino acids

Sequence
(BLAST)

001: MSSLESRVGP AASRDPSYPT KPVLGFCRRL PSRDGSPLPP AAPSCLAPTA APGRGRRAIG LREAKHKRRG APRSEVAAAL RRSAVGVLRG DRDAEEQQSS
101: PSGEERFDWL DKWYPLAPVC DLDPHVPHGK TVLGLSIVDW YDRGAGEGRV FDDACLHCLA SLSEGRIDDR GRLQGLTLEY RDVLQRKRPP LIPEIDDPDF
201: VTVYGIRDLP YGYDILVENL MDPAHAPYAH KGIMRGIRKK EDPGRFSWTL LMSRTVPKFT GKFSFGEPYM DVRTPQCRRT KELSINQLLK FRDRRYEYKG
301: LNETWKGKLA EAKASGNSMK IQKAQDMLVL YDSLQLAHKC ILNFFMDMLC ANIERPSKQD IYNTAMILHA SKEEGILIKK RYAVFNEDGT LAELKGFEIK
401: RR

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.