CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42828	Soybean	plastid	92.06	91.71
KRH42827	Soybean	mitochondrion	24.2	88.89
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	65.6	66.35
Bra013907.1-P	Field mustard	plastid	62.19	61.61
CDX89405	Canola	plastid	62.19	61.61
CDX94430	Canola	plastid	61.81	61.12
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	49.91	60.41
AT4G25650.2	Thale cress	plastid	62.19	58.86
Zm00001d002582_P001	Maize	peroxisome	21.17	52.34
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	50.47	50.09
TraesCS5B01G465000.1	Wheat	golgi	50.09	49.91
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	49.91	49.72
EER93253	Sorghum	plastid	49.34	49.71
Zm00001d034523_P001	Maize	plastid	49.15	49.52
TraesCS7B01G038300.1	Wheat	golgi	47.83	48.47
TraesCS5B01G464800.1	Wheat	cytosol	26.46	48.28
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	46.5	48.05
TraesCS7D01G137200.1	Wheat	golgi	47.26	47.89
Os03t0805900-00	Rice	plastid	25.14	47.5
HORVU5Hr1G109470.1	Barley	plastid	50.85	47.44
TraesCS5A01G455800.1	Wheat	plastid	48.77	47.25
Os03t0805700-00	Rice	mitochondrion	47.07	46.8
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	47.83	45.42
TraesCS7B01G038100.1	Wheat	mitochondrion	41.78	45.01
KXG37317	Sorghum	plastid	44.05	44.21
TraesCS7A01G137000.1	Wheat	plastid	46.69	43.26
Os03t0806300-00	Rice	peroxisome	42.91	39.55
Os03t0805600-00	Rice	extracellular, mitochondrion	15.31	39.51
EER90694	Sorghum	cytosol	20.04	36.05
Zm00001d035045_P001	Maize	plastid	9.45	32.47
KRH30552	Soybean	plastid	29.3	28.44
Zm00001d011533_P001	Maize	plastid	21.55	28.36
KRH25120	Soybean	plastid	29.87	28.06
KRH52304	Soybean	plastid	25.71	25.19
KRH61640	Soybean	plasma membrane, plastid	25.71	23.65
KRH05339	Soybean	cytosol	6.05	23.19
KRH18716	Soybean	golgi	14.37	14.29
KRH16353	Soybean	cytosol, golgi, plastid	14.18	14.04
KRH64672	Soybean	plastid	13.99	13.96
KRH53240	Soybean	plastid	13.99	13.96

Protein Annotations

EntrezGene:100784940	Gene3D:2.102.10.10	MapMan:35.1	EMBL:ACUP02003293	EnsemblPlantsGene:GLYMA_05G156300	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491
GO:GO:0051537	GO:GO:0055114	UniProt:I1K3W8	InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH58922
ProteinID:KRH58922	ProteinID:KRH58922.1	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266
PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961
UniParc:UPI00023399CC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:34881112..34887058

Molecular Weight (calculated)

60142.3 Da

IEP (calculated)

8.872

GRAVY (calculated)

-0.326

Length

529 amino acids

Sequence
(BLAST)

001: MEAVCAFSVG TLHIPTAHET SNSFRKSIFL SNQVASPVSL VFLRGSSKSK LLTALSPPPL TESSNQPEAE PEFESHAEKF DWYSQWYPLM PICDLDKRKP
101: HGKRVLGIDV VVWWDRNEGA WQVHDDACPH RLAPLSDGRI DQWGRLQCVY HGWCFNGKGE CQLIPQALPD GPPVHTSKKA CVAAYPSTVQ NDILWFWPNT
201: DPQYKDIITR KRPPFIPEID DPSYTKSMGN RDIPYGYEVL IENLMDPAHV PYAHYGLMRT PQPKVKADRE GGRPLDMSIE KLDINGFSAN QAWGKSKFMP
301: PCIFYAYTPD QPASSGETKK SSAKKKMCLI FVCVPVSPGK SRLIWCFPRN FGLWMDKIVP RWIFHVGQNL ILDSDLYLLH VEEHKLKDIG PNNWHKACFV
401: PTKSDALVIG YRTWLRKYAG GQVDWRGKYS GALPPTPPRE QLLDRYWSHV VNCKSCNSAY KSLNAVEVML QIISVASIGI VAVMKHGTMS VAKRNSMVAL
501: AVLSFALSRW LAHFIYKNFR YHDYEHAFR

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.