Factsheet for Zm00001d002582_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035045_P001	Maize	plastid	34.11	47.4
Os03t0805900-00	Rice	plastid	57.01	43.57
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	25.7	41.04
Zm00001d034523_P001	Maize	plastid	89.72	36.57
EER93253	Sorghum	plastid	83.18	33.9
Os03t0805600-00	Rice	extracellular, mitochondrion	31.78	33.17
Zm00001d011533_P001	Maize	plastid	57.94	30.85
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	72.43	29.08
TraesCS5B01G465000.1	Wheat	golgi	71.96	29.0
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	71.96	29.0
TraesCS5A01G455800.1	Wheat	plastid	71.5	28.02
TraesCS7D01G137200.1	Wheat	golgi	67.29	27.59
TraesCS7B01G038300.1	Wheat	golgi	66.82	27.39
HORVU5Hr1G109470.1	Barley	plastid	72.43	27.34
Os03t0805700-00	Rice	mitochondrion	67.29	27.07
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	66.82	25.67
TraesCS7A01G137000.1	Wheat	plastid	67.29	25.22
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	59.81	25.0
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	24.3	22.51
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.6	22.46
TraesCS7B01G038100.1	Wheat	mitochondrion	49.07	21.38
KRH58922	Soybean	plastid	52.34	21.17
Os03t0806300-00	Rice	peroxisome	56.07	20.91
KRH42828	Soybean	plastid	51.87	20.9
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	50.47	20.65
Bra013907.1-P	Field mustard	plastid	50.47	20.22
CDX89405	Canola	plastid	50.47	20.22
CDX94430	Canola	plastid	49.53	19.81
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	39.72	19.45
AT4G25650.2	Thale cress	plastid	49.53	18.96
Solyc04g040160.2.1	Tomato	plastid	47.2	18.57
PGSC0003DMT400027602	Potato	plastid	46.73	18.42
Zm00001d027656_P001	Maize	plastid	33.64	13.85
Zm00001d018358_P001	Maize	plastid	28.04	11.15
Zm00001d004531_P001	Maize	extracellular, plastid	11.68	9.09
Zm00001d011819_P001	Maize	plastid	21.96	8.67
Zm00001d042026_P001	Maize	cytosol	19.63	8.28
TraesCS5B01G464800.1	Wheat	cytosol	10.75	7.93
KRH05339	Soybean	cytosol	3.74	5.8
KRH42827	Soybean	mitochondrion	2.8	4.17
VIT_06s0004g00660.t01	Wine grape	cytosol	0.93	2.53
VIT_06s0004g00630.t01	Wine grape	cytosol	0.93	1.8

Protein Annotations

Gene3D:2.102.10.10	MapMan:35.1	UniProt:A0A1D6E216	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	ProteinID:ONM14701.1	PFAM:PF00355	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI000843683F	EnsemblPlantsGene:Zm00001d002582
EnsemblPlants:Zm00001d002582_P001	EnsemblPlants:Zm00001d002582_T001	SEG:seg	:	:	:

Description

Protochlorophyllide-dependent translocon component 52 chloroplastic

Coordinates

chr2:+:15993762..15994696

Molecular Weight (calculated)

24514.2 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.361

Length

214 amino acids

Sequence
(BLAST)

001: MDPLSLLQLP RASRPPLPLA AAAAPLTEEQ QPSPSGEERF DWLDLWYPLA PVCDLDLHVP HGKTVLGLSI VDWYDRGAGE WRVFDDACPH RLASLFEVRI
101: DDRGRLQCVY HGWACVASYP CVVQNNILWF YPRDDPEYKD VLQRKRPLLI PEIDDPDFVT VYGIRDLHYG YDILVENHMD PAHVPYAHKG IMRGIRKKED
201: PGRYVPEASF LPGD

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.