Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g00660.t01 | Wine grape | cytosol | 41.44 | 58.23 |
| VIT_06s0004g00620.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 67.57 | 16.2 |
| TraesCS5B01G464800.1 | Wheat | cytosol | 39.64 | 15.17 |
| GSMUA_Achr2P12380_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 58.56 | 14.87 |
| EER90694 | Sorghum | cytosol | 37.84 | 14.29 |
| VIT_06s0004g00610.t01 | Wine grape | cytosol, plastid | 61.26 | 13.0 |
| PGSC0003DMT400007678 | Potato | cytosol, peroxisome, plasma membrane | 27.03 | 12.99 |
| Solyc04g040160.2.1 | Tomato | plastid | 51.35 | 10.48 |
| CDX94430 | Canola | plastid | 50.45 | 10.47 |
| PGSC0003DMT400027602 | Potato | plastid | 50.45 | 10.31 |
| Bra013907.1-P | Field mustard | plastid | 49.55 | 10.3 |
| CDX89405 | Canola | plastid | 49.55 | 10.3 |
| AT4G25650.2 | Thale cress | plastid | 48.65 | 9.66 |
| TraesCS7B01G038100.1 | Wheat | mitochondrion | 39.64 | 8.96 |
| Zm00001d034523_P001 | Maize | plastid | 42.34 | 8.95 |
| TraesCS7D01G137200.1 | Wheat | golgi | 41.44 | 8.81 |
| EER93253 | Sorghum | plastid | 41.44 | 8.76 |
| TraesCS7B01G038300.1 | Wheat | golgi | 40.54 | 8.62 |
| TraesCS5D01G466600.1 | Wheat | mitochondrion, plasma membrane, plastid | 39.64 | 8.59 |
| Os03t0805700-00 | Rice | mitochondrion | 39.64 | 8.27 |
| HORVU7Hr1G028370.3 | Barley | mitochondrion, peroxisome, plasma membrane | 41.44 | 8.26 |
| TraesCS5A01G456000.1 | Wheat | plasma membrane, plastid | 38.74 | 8.1 |
| TraesCS5B01G465000.1 | Wheat | golgi | 38.74 | 8.1 |
| TraesCS5D01G466800.3 | Wheat | mitochondrion, plasma membrane, plastid | 38.74 | 8.07 |
| TraesCS7A01G137000.1 | Wheat | plastid | 40.54 | 7.88 |
| TraesCS5A01G455800.1 | Wheat | plastid | 38.74 | 7.88 |
| KXG37317 | Sorghum | plastid | 36.04 | 7.59 |
| HORVU5Hr1G109470.1 | Barley | plastid | 38.74 | 7.58 |
| Os03t0806300-00 | Rice | peroxisome | 37.84 | 7.32 |
| VIT_06s0061g00790.t01 | Wine grape | plastid | 24.32 | 5.01 |
| VIT_04s0008g07020.t01 | Wine grape | plastid | 18.02 | 3.68 |
| VIT_18s0001g02700.t01 | Wine grape | cytosol | 11.71 | 2.51 |
| Zm00001d011533_P001 | Maize | plastid | 9.01 | 2.49 |
| Os03t0805600-00 | Rice | extracellular, mitochondrion | 2.7 | 1.46 |
| Os03t0805900-00 | Rice | plastid | 2.7 | 1.07 |
| Zm00001d002582_P001 | Maize | peroxisome | 1.8 | 0.93 |
| Zm00001d035045_P001 | Maize | plastid | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_06s0004g00630 | EMBL:FN594951 | EnsemblPlants:VIT_06s0004g00630.t01 | EnsemblPlantsGene:VIT_06s0004g00630 | PANTHER:PTHR21266 | PANTHER:PTHR21266:SF38 |
| ProteinID:CBI16519 | ProteinID:CBI16519.3 | UniParc:UPI0001BE0DA0 | UniProt:D7SLJ1 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6:-:796135..797274
Molecular Weight (calculated)
12894.7 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.251
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQNLILDSD LYLPHVEVTP VCLLGPSNWH KPYFLPTKSD AHTVAFRAWL RKYSGGQLDR GTEFSMALLP TPPREQLMDR YWSHVVKCSR CSVHTKVSMC
101: LRWCCRSSQL L
101: LRWCCRSSQL L
001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV
Arabidopsis Description
PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.