Factsheet for VIT_06s0061g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30552	Soybean	plastid	74.21	73.39
Solyc11g066440.1.1	Tomato	plastid	72.17	72.44
Os03t0146400-01	Rice	plastid	70.69	72.02
KRH25120	Soybean	plastid	74.4	71.23
AT3G44880.1	Thale cress	plastid	70.5	70.76
EER95507	Sorghum	plastid	68.65	70.61
Zm00001d027656_P001	Maize	plastid	67.9	70.38
TraesCS4B01G311100.1	Wheat	golgi	68.27	70.36
PGSC0003DMT400001216	Potato	plastid	71.43	70.13
CDY29727	Canola	plastid	69.39	70.04
Bra037607.1-P	Field mustard	plastid	69.57	69.96
TraesCS4A01G411000.1	Wheat	plastid	69.2	69.85
HORVU4Hr1G079260.2	Barley	peroxisome	63.64	69.57
TraesCS4D01G309000.1	Wheat	mitochondrion	68.27	69.43
HORVU4Hr1G079330.1	Barley	plastid	68.65	69.03
GSMUA_Achr4P25150_001	Banana	nucleus	69.02	67.27
CDY20340	Canola	plastid	69.57	65.56
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.83	32.4
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	28.94	29.83
VIT_04s0008g07020.t01	Wine grape	plastid	24.68	24.45
VIT_06s0004g00630.t01	Wine grape	cytosol	5.01	24.32
VIT_06s0004g00660.t01	Wine grape	cytosol	3.34	22.78
VIT_18s0001g02700.t01	Wine grape	cytosol	13.91	14.48

Protein Annotations

EntrezGene:100256831	wikigene:100256831	Gene3D:2.102.10.10	MapMan:7.12.6.7.5	ProteinID:ACO56118	ProteinID:ACO56118.1
ProteinID:CBI17127	ProteinID:CBI17127.3	UniProt:D7SN98	EMBL:FJ799360	EMBL:FN594957	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277	GO:GO:0016491
GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	EntrezGene:LOC100256831	wikigene:LOC100256831
PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF24	InterPro:PaO
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TIGR:TC51771	TIGR:TC58758
UniParc:UPI00015C9BF2	ArrayExpress:VIT_06s0061g00790	EnsemblPlantsGene:VIT_06s0061g00790	EnsemblPlants:VIT_06s0061g00790.t01	unigene:Vvi.1357	RefSeq:XP_002274210
RefSeq:XP_002274210.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:18321234..18327332

Molecular Weight (calculated)

60802.0 Da

IEP (calculated)

6.962

GRAVY (calculated)

-0.363

Length

539 amino acids

Sequence
(BLAST)

001: MAFLLYGCAT TAALPGLFPN STTCFLSSHP SKPTNPSFRT TRSLTFSPLR VAAPPTQPVT SDQSNEERED EVVAVDDERS SSSSKFLWRD HWYPVSLIED
101: LDTNRPTPFQ LLGRDIVLWK DKSTAEWVAF DDKCPHRLAP LSEGRIDENG YLQCSYHGWS FDKCGSCKRI PQALPEGPEA RAVGSPRACA TRFPTMVSQG
201: LLFVWPDENG WERASATKPP MLPDEFENPE FSTVTIQRDL FYGYDTLMEN VSDPSHIDFA HHKVTGRRDR AKPLPFKLES SGPGGFAGAN DGNPRISAKF
301: VAPCYYMNKI EIDTKLPIVG EQKWKIWICS FNVPMAPGKT RSIVCSARNF FQFSMPGPAW WQVVPRWHEH WTSNKVYDGD MIVLQGQEKI FLSKSKEGSA
401: DVNEQYTQIT FTPTQSDRFV LAFRNWLRRH GNSQPDWFGI SNQGPLPSTV LSKRQMLDRF EQHTLNCSSC KGAYTTFQTM QKLFIGAAVV FCATTGIPSE
501: MWIRVILAGL ALLSSALAYA LHELQKNFVF VDYVHAEIE

Best Arabidopsis Sequence Match ( AT3G44880.1 )
(BLAST)

001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

Arabidopsis Description

PAOPheophorbide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.