Factsheet for VIT_06s0004g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00620.t01	Wine grape	cytosol, peroxisome, plasma membrane	63.1	71.27
Solyc04g039870.1.1	Tomato	cytosol, peroxisome, plastid	17.21	67.16
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	55.83	66.82
KRH42827	Soybean	mitochondrion	18.16	65.97
KRH58922	Soybean	plastid	66.35	65.6
KRH42828	Soybean	plastid	66.35	65.35
CDX94430	Canola	plastid	63.67	62.24
CDX89405	Canola	plastid	63.1	61.8
Bra013907.1-P	Field mustard	plastid	63.1	61.8
VIT_06s0004g00630.t01	Wine grape	cytosol	13.0	61.26
AT4G25650.2	Thale cress	plastid	63.67	59.57
VIT_06s0004g00660.t01	Wine grape	cytosol	8.22	54.43
EER93253	Sorghum	plastid	51.43	51.24
Zm00001d034523_P001	Maize	plastid	50.86	50.67
Zm00001d002582_P001	Maize	peroxisome	20.65	50.47
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	50.1	49.16
TraesCS5B01G465000.1	Wheat	golgi	49.9	49.15
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	49.52	48.78
TraesCS5B01G464800.1	Wheat	cytosol	26.39	47.59
Os03t0805700-00	Rice	mitochondrion	48.37	47.56
TraesCS7B01G038300.1	Wheat	golgi	47.23	47.32
Os03t0805900-00	Rice	plastid	25.24	47.14
TraesCS7D01G137200.1	Wheat	golgi	47.04	47.13
TraesCS5A01G455800.1	Wheat	plastid	48.95	46.89
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	45.32	46.29
HORVU5Hr1G109470.1	Barley	plastid	49.9	46.03
TraesCS7B01G038100.1	Wheat	mitochondrion	43.02	45.82
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	47.8	44.88
KXG37317	Sorghum	plastid	44.55	44.21
TraesCS7A01G137000.1	Wheat	plastid	46.65	42.73
Os03t0805600-00	Rice	extracellular, mitochondrion	16.44	41.95
EER90694	Sorghum	cytosol	21.61	38.44
Os03t0806300-00	Rice	peroxisome	41.11	37.46
Zm00001d035045_P001	Maize	plastid	10.52	35.71
VIT_06s0061g00790.t01	Wine grape	plastid	29.83	28.94
Zm00001d011533_P001	Maize	plastid	21.03	27.36
VIT_04s0008g07020.t01	Wine grape	plastid	25.62	24.63
VIT_18s0001g02700.t01	Wine grape	cytosol	14.72	14.86

Protein Annotations

EntrezGene:100263831	wikigene:100263831	Gene3D:2.102.10.10	MapMan:35.1	ProteinID:CCB43802	ProteinID:CCB43802.1
UniProt:F6GUK7	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	EntrezGene:LOC100263831	wikigene:LOC100263831	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296
PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022
SUPFAM:SSF55961	UniParc:UPI00021091D4	ArrayExpress:VIT_06s0004g00610	EnsemblPlantsGene:VIT_06s0004g00610	EnsemblPlants:VIT_06s0004g00610.t01	RefSeq:XP_002283592
RefSeq:XP_002283592.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:769211..772779

Molecular Weight (calculated)

59513.1 Da

IEP (calculated)

8.560

GRAVY (calculated)

-0.155

Length

523 amino acids

Sequence
(BLAST)

001: MEALRPCIVP ARLPTASYEK PMLHLPFRSV PTSIFPPIRQ CTARSRVVTA VSSTVSTEPV NPVEPEVQSH SQEEKFNWLL QWYPVMPVCD LDKRIPHAKK
101: VIGLDVVVWW DRNENAWKVF DDMCPHRLAP LSEGRIDQWG RLQCVYHGWC FNGSGDCKFI PQAPPDGPPV HTFKKACVSV YPSTVQNDIV WFWPNTDPQY
201: KDILMKNKPP YIPELDDPSY TRLMGNREIP YGYEVLIENL MDPAHVPYAH YGIMTADREG GRPLEMKIQK LDRSGFIGKQ EGGTSKFIPP CVFYVSSDLF
301: IDKTNGSASS VETKKEVQRR MLLIFICIPV SPGNSRLIWT FPRNFGVWVD RVVPRWMFHV GQNLILDSDL YLLHVEERKI MDIGPSNWQK ACFVPTKSDA
401: CVVGFRKWLN KYAGGQVDWG TKFSGALPPT PPREQLMDRY WSHVVNCSSC RVAIKGLNAL EVVLQVISVA SIGIVAATKQ SLMSVAARTA LVSMAVICFA
501: ASRWLSHFIY KIFHFHDYNH ALR

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.