CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58922	Soybean	plastid	91.71	92.06
KRH42827	Soybean	mitochondrion	24.11	88.89
VIT_06s0004g00610.t01	Wine grape	cytosol, plastid	65.35	66.35
Bra013907.1-P	Field mustard	plastid	62.71	62.36
CDX89405	Canola	plastid	62.71	62.36
CDX94430	Canola	plastid	62.71	62.24
GSMUA_Achr2P12380_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	50.85	61.78
AT4G25650.2	Thale cress	plastid	63.09	59.93
Zm00001d002582_P001	Maize	peroxisome	20.9	51.87
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	49.34	49.16
TraesCS5B01G465000.1	Wheat	golgi	48.78	48.78
Zm00001d034523_P001	Maize	plastid	48.21	48.76
EER93253	Sorghum	plastid	48.21	48.76
TraesCS5A01G456000.1	Wheat	plasma membrane, plastid	48.59	48.59
Os03t0805900-00	Rice	plastid	25.24	47.86
TraesCS7B01G038300.1	Wheat	golgi	46.14	46.93
TraesCS5B01G464800.1	Wheat	cytosol	25.42	46.55
TraesCS7D01G137200.1	Wheat	golgi	45.76	46.55
Os03t0805700-00	Rice	mitochondrion	46.52	46.43
HORVU5Hr1G109470.1	Barley	plastid	49.53	46.38
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	44.44	46.09
TraesCS5A01G455800.1	Wheat	plastid	47.27	45.97
TraesCS7B01G038100.1	Wheat	mitochondrion	41.05	44.4
HORVU7Hr1G028370.3	Barley	mitochondrion, peroxisome, plasma membrane	46.33	44.17
KXG37317	Sorghum	plastid	43.69	44.02
TraesCS7A01G137000.1	Wheat	plastid	45.2	42.03
Os03t0806300-00	Rice	peroxisome	42.0	38.85
Os03t0805600-00	Rice	extracellular, mitochondrion	14.5	37.56
EER90694	Sorghum	cytosol	19.96	36.05
Zm00001d035045_P001	Maize	plastid	9.23	31.82
KRH30552	Soybean	plastid	29.0	28.26
KRH25120	Soybean	plastid	29.57	27.89
Zm00001d011533_P001	Maize	plastid	20.9	27.61
KRH52304	Soybean	plastid	25.24	24.81
KRH05339	Soybean	cytosol	6.21	23.91
KRH61640	Soybean	plasma membrane, plastid	25.24	23.3
KRH18716	Soybean	golgi	14.12	14.1
KRH16353	Soybean	cytosol, golgi, plastid	13.94	13.86
KRH64672	Soybean	plastid	13.75	13.77
KRH53240	Soybean	plastid	13.75	13.77

Protein Annotations

EntrezGene:100800521	Gene3D:2.102.10.10	MapMan:35.1	EMBL:ACUP02004832	EnsemblPlantsGene:GLYMA_08G114400	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0010277
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	UniProt:I1KSC2
InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH42828	ProteinID:KRH42828	ProteinID:KRH42828.1	PFAM:PF00355
PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF38	InterPro:PaO	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI0002338F64	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:8749910..8755711

Molecular Weight (calculated)

60549.7 Da

IEP (calculated)

8.803

GRAVY (calculated)

-0.334

Length

531 amino acids

Sequence
(BLAST)

001: MEAVYAFSVG TLHIPTAHET PNSFRKSIFL SNQVASPVSL VLRGASKSKL FTALSPPPLT ESSNNQPEEA EPEFESHAEK FDWYSHWYPL MPICDLDKRK
101: PHGKRVLGID VVVWWDRNEG VWQVHDDACP HRLAPLSDGR IDQWGRLQCV YHGWCFNGKG ECKLIPQAPP DGPPVHTSKK ACVAAYPSTV QNDILWFWPN
201: TDPQYKDIIT RKRPPYIPEL DDPSYTKLMG NRDISYGYEV LIENLMDPAH VPYAHYGLMR TPKPKVKVDR EGGRPLELSI ETLDINGFTA NQGWSKSKFM
301: PPCIFYVYTD SDQPASSAET QKSSAQKKFA LIFVCVPVSP GKSRLIWCFP RNFGVWIDKI VPRWIFHVGQ NRILDSDLYL LHVEEQKIVD IGPKNWHKAC
401: FVPTKSDALV IGYRNWLKKY AGGQVDWRGK YSGALPPTPP REQLMDRYWS HVVNCKSCNS AYKSLNVIEV MLQIISVASI GIVAIMKHGT MSVAKRNSMV
501: ALAVLSLALS RWLAHFIYKN FRYHDYEHAF R

Best Arabidopsis Sequence Match ( AT4G25650.1 )
(BLAST)

001: MEAALAACAL PSLRILNTKP RFRCSFSNPS LPISPNSLIT RKSSRFTTAV SSPPSSSAAT STNSPPEPEA LFEPGSDKFD WYANWYPVMP ICDLDKKVPH
101: GKKVMGIDLV VWWDRNEKQW KVMDDTCPHR LAPLSDGRID QWGRLQCVYH GWCFNGSGDC KLIPQAPPDG PPVHTFKQAC VAVYPSTVQH EIIWFWPNSD
201: PKYKNIIETN KPPYIPELED PSFTKLMGNR DIPYGYDVLV ENLMDPAHVP YAHYGLMRFP KPKEKIDREG GKPLEINVKK LDNKGFFSKQ EWGYSNFIAP
301: CVYRSSTDPL PEQEHEYPAP AASDKAALSK RRLSLIFICI PVSPGRSRLI WTFPRNFGVF IDKIVPRWVF HIGQNTILDS DLHLLHVEER KILERGPENW
401: QKACFIPTKS DANVVTFRRW FNKYSEARVD WRGKFDPFLL PPTPPREQLF DRYWSHVENC SSCKKAHKYL NALEVILQIA SVAMIGVMAV LKQTTMSNVA
501: RIAVLVAAVL SFAASKWLSH FIYKTFHYHD YNHAVV

Arabidopsis Description

PTC52Protochlorophyllide-dependent translocon component 52, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W496]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.