CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	peroxisome
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64672	Soybean	plastid	96.79	96.79
KRH18716	Soybean	golgi	85.85	85.53
KRH16353	Soybean	cytosol, golgi, plastid	86.04	85.39
VIT_18s0001g02700.t01	Wine grape	cytosol	80.19	82.05
Solyc11g012850.1.1	Tomato	plastid	82.26	81.5
PGSC0003DMT400002345	Potato	plastid	82.08	81.31
Solyc06g060310.2.1	Tomato	golgi	80.94	80.19
PGSC0003DMT400045302	Potato	plastid	80.75	80.0
CDY36339	Canola	plastid	76.42	77.29
Bra036948.1-P	Field mustard	plastid	77.36	76.78
CDY14980	Canola	plastid	77.36	76.78
AT1G44446.1	Thale cress	plastid	77.55	76.68
CDY63862	Canola	plastid	76.42	76.27
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	75.66	74.26
GSMUA_Achr6P25590_001	Banana	plastid	76.79	74.13
Os10t0567400-01	Rice	mitochondrion	74.53	73.01
Zm00001d011819_P001	Maize	plastid	74.15	72.51
EES04263	Sorghum	cytosol	73.58	71.96
Zm00001d042026_P001	Maize	cytosol	68.68	71.79
HORVU0Hr1G007360.2	Barley	mitochondrion	71.13	68.55
TraesCS3A01G506200.1	Wheat	mitochondrion	70.94	68.36
TraesCS3D01G514100.1	Wheat	mitochondrion	70.94	68.36
TraesCS3B01G574300.1	Wheat	mitochondrion	70.75	68.18
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	68.87	67.34
Zm00001d004531_P001	Maize	extracellular, plastid	23.4	45.09
KRH05339	Soybean	cytosol	4.72	18.12
KRH52304	Soybean	plastid	15.66	15.37
KRH30552	Soybean	plastid	15.09	14.68
KRH61640	Soybean	plasma membrane, plastid	15.66	14.43
KRH25120	Soybean	plastid	15.09	14.21
KRH58922	Soybean	plastid	13.96	13.99
KRH42828	Soybean	plastid	13.77	13.75
KRH42827	Soybean	mitochondrion	2.08	7.64

Protein Annotations

EntrezGene:100780485	Gene3D:2.102.10.10	MapMan:7.12.6.6.1	EMBL:ACUP02003455	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G113500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152
GO:GO:0010277	GO:GO:0016491	GO:GO:0016705	GO:GO:0051537	GO:GO:0055114	UniProt:I1KAA1
InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH53240	ProteinID:KRH53240	ProteinID:KRH53240.1	PFAM:PF00355
PFAM:PF08417	ScanProsite:PS00570	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19	InterPro:PaO
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Ring-hydroxy_dOase_2Fe2S_BS	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI0002339749
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:9213936..9219335

Molecular Weight (calculated)

60329.8 Da

IEP (calculated)

8.336

GRAVY (calculated)

-0.344

Length

530 amino acids

Sequence
(BLAST)

001: MNAIATAALL SLPFSFSKSS KLDTKKGLKG RFRVFAVYGE EIDKKSTWSA LFDVEDPRSK VPQYKGKFLD VYQALEFARY DIQYCDWRAR QDLLAIMLLH
101: EKVVEVLNPL ARDYKSIGTM KKELAGLQEE LALAHQQVHI SEARVSTALD KLAYMEELVN DKLLQERTTT EVSQTSSSPS TSFKPVDVEK RRPPRKSLDI
201: SGPVQSYHTH LKNFWYPVAF STDLKDDTMI PIECFEEPWV IFRGKDGKPG CVQNTCAHRA CPLHLGSVKE GRIQCPYHGW EYTTDGKCEK MPSTRLLNVK
301: IKSLPCFEKE GMIWVWPGND PPTATLPSLL PPSGFEVHAE IVMELPIEHG LLLDNLLDLA HAPFTHTSTF AKGWSVPSLV KFLTPASGLQ GYWDPYPIDM
401: EFRPPCMVLS TIGISKPGKL EGQSTSQCAT HLHQLHVCLP SSKQKTRLLY RMSLDFAPVL KHIPFMQHLW RYFAEQVLNE DLRLVLGQQE RMNNGANVWN
501: FPVSYDKLGV RYRLWRNALE QGTKQPPFSK

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.