Factsheet for Bra036948.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14980	Canola	plastid	99.81	99.81
AT1G44446.1	Thale cress	plastid	91.76	91.42
VIT_18s0001g02700.t01	Wine grape	cytosol	76.59	78.96
KRH64672	Soybean	plastid	76.97	77.55
KRH53240	Soybean	plastid	76.78	77.36
Solyc11g012850.1.1	Tomato	plastid	76.97	76.82
PGSC0003DMT400002345	Potato	plastid	76.59	76.45
KRH18716	Soybean	golgi	75.66	75.94
KRH16353	Soybean	cytosol, golgi, plastid	75.66	75.66
Solyc06g060310.2.1	Tomato	golgi	75.66	75.51
PGSC0003DMT400045302	Potato	plastid	75.09	74.95
EES04263	Sorghum	cytosol	73.97	72.88
Os10t0567400-01	Rice	mitochondrion	73.22	72.27
Zm00001d042026_P001	Maize	cytosol	67.79	71.4
Zm00001d011819_P001	Maize	plastid	72.28	71.22
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	71.16	70.37
GSMUA_Achr6P25590_001	Banana	plastid	72.1	70.13
HORVU0Hr1G007360.2	Barley	mitochondrion	70.04	68.0
TraesCS3A01G506200.1	Wheat	mitochondrion	69.85	67.82
TraesCS3D01G514100.1	Wheat	mitochondrion	69.85	67.82
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	68.54	67.53
TraesCS3B01G574300.1	Wheat	mitochondrion	69.48	67.45
Zm00001d004531_P001	Maize	extracellular, plastid	22.85	44.36
Bra000547.1-P	Field mustard	plastid	16.29	16.08
Bra013907.1-P	Field mustard	plastid	14.98	14.98
Bra037607.1-P	Field mustard	plastid	14.61	14.55

Protein Annotations

Gene3D:2.102.10.10	MapMan:7.12.6.6.1	EnsemblPlantsGene:Bra036948	EnsemblPlants:Bra036948.1	EnsemblPlants:Bra036948.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009579	GO:GO:0009706	GO:GO:0009987	GO:GO:0010277	GO:GO:0015995
GO:GO:0016020	GO:GO:0016491	GO:GO:0016705	GO:GO:0042651	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	UniProt:M4F788	PFAM:PF00355	PFAM:PF08417	ScanProsite:PS00570
PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19	InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Ring-hydroxy_dOase_2Fe2S_BS	SUPFAM:SSF50022	SUPFAM:SSF55961	UniParc:UPI000199A3E5	SEG:seg	:

Description

AT1G44446 (E=2e-285) CH1, ATCAO, CAO | CH1 (CHLORINA 1); chlorophyllide a oxygenase

Coordinates

chrScaffold000123:-:259297..261553

Molecular Weight (calculated)

60237.5 Da

IEP (calculated)

7.574

GRAVY (calculated)

-0.321

Length

534 amino acids

Sequence
(BLAST)

001: MNAAVFTSSA LSLPISFCKT RSSQLTRKKG VKGEFRVFAV FGEDSGLVEK KSQWGHLFDV EDPRSKTPPY KGKFMDVNQA LEVARFDIQY LDWRARQDLL
101: TIMLLHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELAKA HQQVHISEAR VSTALEKLAH MEELVNDRLL PDRVATESDR PSYSTSVQDL DREKTNIGGK
201: SLNVSGPVQP YSPHLKNFWY PVAFTADLKH DTMVPIDCFE QPWVIFRGED GKPGCVRNTC AHRACPLDLG SVNNGRIQCP YHGWEYSTDG KCTKMPSTKL
301: LNVKIKSIPC LEQDGMVWVW PGDEPPSPTL PCLQPPSGFV IHAELVMDLP VEHGLLLDNL LDLAHAPFTH TSTFAKGWSV PSLVKFLTPS SGLQGYWDPY
401: PIDMEFKPPC IVLSTIGISK PGKLEGKSTE QCATHLHQLH VCLPSSRNKT RLLYRMSLDF APILKNLPFM EHLWRHFAEQ VLNEDLRLVL GQQERMLNGA
501: NIWNLPVAYD KLGVRYRLWR NAVDRGDDKL PFSG

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.