Factsheet for PGSC0003DMT400002345

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012850.1.1	Tomato	plastid	99.25	99.25
PGSC0003DMT400045302	Potato	plastid	86.92	86.92
KRH64672	Soybean	plastid	82.06	82.83
KRH53240	Soybean	plastid	81.31	82.08
VIT_18s0001g02700.t01	Wine grape	cytosol	79.07	81.66
KRH18716	Soybean	golgi	80.19	80.64
KRH16353	Soybean	cytosol, golgi, plastid	79.63	79.78
CDY36339	Canola	plastid	75.51	77.1
Bra036948.1-P	Field mustard	plastid	76.45	76.59
CDY14980	Canola	plastid	76.45	76.59
AT1G44446.1	Thale cress	plastid	76.45	76.31
CDY63862	Canola	plastid	75.51	76.08
GSMUA_Achr6P25590_001	Banana	plastid	76.64	74.68
Os10t0567400-01	Rice	mitochondrion	74.95	74.12
GSMUA_Achr6P18880_001	Banana	mitochondrion, plastid	74.58	73.89
EES04263	Sorghum	cytosol	74.58	73.62
Zm00001d042026_P001	Maize	cytosol	69.35	73.18
Zm00001d011819_P001	Maize	plastid	73.83	72.88
HORVU0Hr1G007360.2	Barley	mitochondrion	71.4	69.45
TraesCS3A01G506200.1	Wheat	mitochondrion	71.22	69.27
TraesCS3D01G514100.1	Wheat	mitochondrion	71.22	69.27
TraesCS3B01G574300.1	Wheat	mitochondrion	70.84	68.91
Os10t0567100-01	Rice	peroxisome, plasma membrane, plastid	68.6	67.71
Zm00001d004531_P001	Maize	extracellular, plastid	23.74	46.18
PGSC0003DMT400075266	Potato	plastid	16.64	16.21
PGSC0003DMT400027602	Potato	plastid	14.02	13.81
PGSC0003DMT400001216	Potato	plastid	13.83	13.48
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	5.61	12.99

Protein Annotations

EntrezGene:102594460	Gene3D:2.102.10.10	MapMan:7.12.6.6.1	ProteinID:ABD93563	ProteinID:ABD93563.2	ncoils:Coil
EMBL:DQ423121	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150
GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0016705	GO:GO:0051537	GO:GO:0055114
InterPro:IPR017941	InterPro:IPR036922	UniProt:M0ZJZ3	PFAM:PF00355	PFAM:PF08417	EnsemblPlantsGene:PGSC0003DMG402000895
PGSC:PGSC0003DMG402000895	EnsemblPlants:PGSC0003DMT400002345	ScanProsite:PS00570	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF19
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Ring-hydroxy_dOase_2Fe2S_BS	SUPFAM:SSF50022	SUPFAM:SSF55961
UniParc:UPI000296AC77	RefSeq:XP_006351904.1	SEG:seg	:	:	:

Description

Chlorophyll synthase [Source:PGSC_GENE;Acc:PGSC0003DMG402000895]

Coordinates

chr11:+:11083528..11088479

Molecular Weight (calculated)

60331.5 Da

IEP (calculated)

7.676

GRAVY (calculated)

-0.295

Length

535 amino acids

Sequence
(BLAST)

001: MTAIATATAI SLSLPFSLCR SNKSYTRKFV KGSFGVFAVY GEEGGIPDKK SSWLTLFNVE DPRTKVPQSK GKFLDANQAL EVARYDLQYC DWRARQDVLT
101: IMLLHEKVVE VLNPLARDYK SIGTMKKELA ELQEELSQAH NQVHISETRV SAALDKLAYM EELVNDRLLQ ERSTVESECT SSSASTSTGL LDTPKSKQPR
201: RTLNVSGPVK DYSSRLKNFW YPVAFSADLK DDTMLPIDCF EQSWVIFRGA DGKPGCVRNT CAHRACPLDL GSVNEGRIQC PYHGWEYSTD GKCEKMPSTR
301: LLNVKIKALP CFEQEGMIWI WPGNDPPAAT LPSLLPPSGF QIHAEIVMEL PVEHGLLLDN LLDLAHAPFT HTSTFAKGWS VPSLVKFLTP ASGLQGYWDP
401: YPIDMEFRPP CMVLSTIGIS KPGKLEGQST KQCSTHLHQL HVCLPASRQK TRLLYRMSLD FAPLLKHIPF MQYVWRHFAE QVLNEDLRLV LGQQDRMLNG
501: ANIWNLPVSY DKLGVRYRIW RDAVDSGEKE LPFSK

Best Arabidopsis Sequence Match ( AT1G44446.1 )
(BLAST)

001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG

Arabidopsis Description

CAOCH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.