Factsheet for PGSC0003DMT400075266

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096550.1.1	Tomato	plastid	96.72	97.25
VIT_04s0008g07020.t01	Wine grape	plastid	72.31	72.98
KRH52304	Soybean	plastid	69.95	71.11
AT2G24820.1	Thale cress	plastid	66.67	67.9
CDX83228	Canola	plastid	66.67	67.65
CDY38513	Canola	plastid	66.67	67.65
Bra000547.1-P	Field mustard	plastid	66.48	67.47
CDY38515	Canola	plastid	66.48	67.47
KRH61640	Soybean	plasma membrane, plastid	69.76	66.61
Os02t0792800-01	Rice	plastid	60.66	61.78
TraesCS6B01G386400.1	Wheat	plastid	59.74	60.52
TraesCS6D01G336000.1	Wheat	golgi	59.56	60.33
EES05942	Sorghum	plastid	59.02	60.22
TraesCS6A01G353700.1	Wheat	plastid	59.56	60.11
Zm00001d018358_P001	Maize	plastid	58.83	60.04
GSMUA_Achr7P16230_001	Banana	plastid	60.47	59.71
HORVU6Hr1G084510.1	Barley	plastid	59.38	57.29
CDY38514	Canola	plastid	23.86	55.74
PGSC0003DMT400007678	Potato	cytosol, peroxisome, plasma membrane	10.38	24.68
PGSC0003DMT400001216	Potato	plastid	22.95	22.95
PGSC0003DMT400027602	Potato	plastid	22.4	22.65
PGSC0003DMT400045302	Potato	plastid	16.39	16.82
PGSC0003DMT400002345	Potato	plastid	16.21	16.64

Protein Annotations

EntrezGene:102605482	Gene3D:2.102.10.10	MapMan:23.1.3.5.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0010277	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0045036	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	UniProt:M1CUU9	PFAM:PF00355	PFAM:PF08417	EnsemblPlantsGene:PGSC0003DMG401029274	PGSC:PGSC0003DMG401029274
EnsemblPlants:PGSC0003DMT400075266	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29	InterPro:PaO	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	TMHMM:TMhelix	UniParc:UPI0002954FCF	RefSeq:XP_006342449.1
RefSeq:XP_015162051.1	RefSeq:XP_015162052.1	SEG:seg	:	:	:

Description

Chlorophyll a oxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG401029274]

Coordinates

chr12:-:58182823..58186455

Molecular Weight (calculated)

62860.1 Da

IEP (calculated)

8.722

GRAVY (calculated)

-0.413

Length

549 amino acids

Sequence
(BLAST)

001: MALQQPFLSE LLHSSSKRTT LPKSSLFSLQ IPQRFNFYLQ NKQFKKQGRS CYAIAENLGA EVLDEDQSVI LENSSLDELR GQREIVGYDW TEEWYPLYLT
101: KNVPDDAPLG LTVFDKQVVL YKDGSGELRC FEDRCPHRLA KLSEGQLYDG KLECLYHGWQ FDGDGKCVKI PQLPENAKIP RSACTKTYEI RDSQGVVWIW
201: MSHRTPPNVN KIPWFENFDR KGFRDISTIH ELPYDHSILL ENLMDPAHVP ISHDRTDFTA KREDAGPLFF EVTERTNRGF AGWWGKEKDQ GKANYTPNFL
301: RFESPCVLQN NREIVDESGE KHYFSGLFLC RPSGQGKSML IVRFGNTRKR TGILKFIPNW FLHQNASKVF EQDMGFLSSQ NEILMKEKVP TKKLYLNLKS
401: SDTWVAEYRK WMDKVGHGMP YHFGHSTIFL PQQPAVVEHA PAGFVANFSA AQPAKGGIGD MYAPNPANRY FRHVVHCRDC SNVVKAFETW KKALSVIALV
501: STAFAILVSG RQWKALLLLW TSLCLAGAYA CSTAIAMNTT NFIRTHRRL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.