Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000547.1-P | Field mustard | plastid | 90.72 | 90.39 |
| CDX83228 | Canola | plastid | 90.72 | 90.39 |
| CDY38513 | Canola | plastid | 90.72 | 90.39 |
| CDY38515 | Canola | plastid | 90.72 | 90.39 |
| CDY38514 | Canola | plastid | 36.18 | 82.98 |
| KRH52304 | Soybean | plastid | 71.99 | 71.85 |
| VIT_04s0008g07020.t01 | Wine grape | plastid | 69.76 | 69.12 |
| KRH61640 | Soybean | plasma membrane, plastid | 71.61 | 67.13 |
| Solyc12g096550.1.1 | Tomato | plastid | 67.72 | 66.85 |
| PGSC0003DMT400075266 | Potato | plastid | 67.9 | 66.67 |
| GSMUA_Achr7P16230_001 | Banana | plastid | 64.75 | 62.77 |
| Os02t0792800-01 | Rice | plastid | 62.71 | 62.71 |
| TraesCS6B01G386400.1 | Wheat | plastid | 62.34 | 61.99 |
| EES05942 | Sorghum | plastid | 61.78 | 61.9 |
| TraesCS6D01G336000.1 | Wheat | golgi | 62.15 | 61.81 |
| TraesCS6A01G353700.1 | Wheat | plastid | 62.15 | 61.58 |
| Zm00001d018358_P001 | Maize | plastid | 60.85 | 60.97 |
| HORVU6Hr1G084510.1 | Barley | plastid | 61.78 | 58.52 |
| AT3G44880.1 | Thale cress | plastid | 24.68 | 24.77 |
| AT4G25650.2 | Thale cress | plastid | 23.56 | 22.72 |
| AT1G44446.1 | Thale cress | plastid | 15.21 | 15.3 |
Protein Annotations
| Gene3D:2.102.10.10 | MapMan:23.1.3.5.2 | EntrezGene:817019 | ProteinID:AAD23030.1 | ProteinID:AEC07632.1 | EMBL:AK221423 |
| ArrayExpress:AT2G24820 | EnsemblPlantsGene:AT2G24820 | RefSeq:AT2G24820 | TAIR:AT2G24820 | RefSeq:AT2G24820-TAIR-G | EnsemblPlants:AT2G24820.1 |
| TAIR:AT2G24820.1 | Unigene:At.22189 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009528 | GO:GO:0009536 | GO:GO:0009706 | GO:GO:0009941 | GO:GO:0010277 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0045036 | GO:GO:0046872 |
| GO:GO:0051536 | GO:GO:0051537 | GO:GO:0055114 | InterPro:IPR017941 | InterPro:IPR036922 | RefSeq:NP_180055.1 |
| PFAM:PF00355 | PFAM:PF08417 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51296 | PANTHER:PTHR21266 | PANTHER:PTHR21266:SF29 | InterPro:PaO |
| UniProt:Q9SK50 | InterPro:Rieske_2Fe-2S | InterPro:Rieske_2Fe-2S_sf | SUPFAM:SSF50022 | SUPFAM:SSF55961 | Symbol:TIC55-II |
| TMHMM:TMhelix | UniParc:UPI000009CA82 | SEG:seg | : | : | : |
Description
TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
Coordinates
chr2:+:10574942..10576938
Molecular Weight (calculated)
60610.9 Da
IEP (calculated)
8.873
GRAVY (calculated)
-0.281
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.