CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018358_P001	Maize	plastid	93.12	93.12
Os02t0792800-01	Rice	plastid	84.2	84.04
TraesCS6B01G386400.1	Wheat	plastid	82.9	82.29
TraesCS6D01G336000.1	Wheat	golgi	82.71	82.1
TraesCS6A01G353700.1	Wheat	plastid	82.34	81.43
HORVU6Hr1G084510.1	Barley	plastid	82.34	77.86
VIT_04s0008g07020.t01	Wine grape	plastid	64.68	63.97
KRH52304	Soybean	plastid	63.2	62.96
GSMUA_Achr4P20520_001	Banana	plastid	58.55	62.01
AT2G24820.1	Thale cress	plastid	61.9	61.78
Bra000547.1-P	Field mustard	plastid	61.9	61.55
CDX83228	Canola	plastid	61.9	61.55
CDY38513	Canola	plastid	61.9	61.55
CDY38515	Canola	plastid	61.9	61.55
KRH61640	Soybean	plasma membrane, plastid	63.75	59.65
PGSC0003DMT400075266	Potato	plastid	60.22	59.02
Solyc12g096550.1.1	Tomato	plastid	59.85	58.97
CDY38514	Canola	plastid	22.68	51.91
EER93253	Sorghum	plastid	24.16	24.76
EER95507	Sorghum	plastid	23.61	24.24
KXG37317	Sorghum	plastid	21.19	21.63
EER90694	Sorghum	cytosol	9.48	17.35
EES04263	Sorghum	cytosol	16.36	16.24

Protein Annotations

Gene3D:2.102.10.10	MapMan:23.1.3.5.2	EntrezGene:8081972	UniProt:C5XUD5	EnsemblPlants:EES05942	ProteinID:EES05942
ProteinID:EES05942.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0010277	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0045036	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355
PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29	InterPro:PaO	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	EnsemblPlantsGene:SORBI_3004G327200	SUPFAM:SSF50022	SUPFAM:SSF55961	unigene:Sbi.10547	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0001A85B18	RefSeq:XP_002452966.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:66206758..66209737

Molecular Weight (calculated)

59374.8 Da

IEP (calculated)

8.879

GRAVY (calculated)

-0.254

Length

538 amino acids

Sequence
(BLAST)

001: MTTPPAPLAS LLLRVSAAAV AVAPRRKSPA TAAAARWAGG GGRRRTRTRR CRAAVVEEAG VLLPKEGEGE EAAEAAAAAG RYDWKEEWYP LYLSKEVPDD
101: AALPLTVFDR QLVLWRDGNG VLRCHEDRCP HRLAKLSEGQ IVDGKLECLY HGWQFDGEGK CVKIPQLPEG AKIPRSACAR NYEVRDSQGV VWVWVSDANP
201: PDEGKLPWFE PYARAGFTDL STVHELPYDH SILLENLMDP AHVPISHDRT DWTAKREDAQ PLFFDVTERT PRGFAGYWGR TSTPHLRNLL RFEAPCVLTN
301: TLEYTDKDGT EQCFSAHFLC RPAGQGKSML LVRFGSTLRS PLAKVLPTWY FHQNACKVFE QDMGFLSSQN EVLLREKVPT RELYLNLRSS DTWVAEYRKW
401: MDRAGHGMPY YFGHTTLSPP PVPAVVEQAP AGAVAGISAS FPAKGGVGTV HAPNPTNRYF RHVVHCKGCR ATVKKYTSLK NAFAALAAAA VAAAVLAATR
501: QWKAVLLAAS AVLAAASYAC DALVSLLTTN FIRTHRRL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.