Factsheet for TraesCS6B01G386400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G336000.1	Wheat	golgi	98.16	98.16
TraesCS6A01G353700.1	Wheat	plastid	97.6	97.24
HORVU6Hr1G084510.1	Barley	plastid	95.94	91.39
EES05942	Sorghum	plastid	82.29	82.9
Os02t0792800-01	Rice	plastid	81.73	82.19
Zm00001d018358_P001	Maize	plastid	81.55	82.16
VIT_04s0008g07020.t01	Wine grape	plastid	64.39	64.15
Bra000547.1-P	Field mustard	plastid	62.36	62.48
CDY38515	Canola	plastid	62.36	62.48
CDY38513	Canola	plastid	62.36	62.48
CDX83228	Canola	plastid	62.36	62.48
KRH52304	Soybean	plastid	62.18	62.41
AT2G24820.1	Thale cress	plastid	61.99	62.34
GSMUA_Achr4P20520_001	Banana	plastid	57.75	61.61
Solyc12g096550.1.1	Tomato	plastid	60.52	60.07
PGSC0003DMT400075266	Potato	plastid	60.52	59.74
KRH61640	Soybean	plasma membrane, plastid	62.92	59.3
CDY38514	Canola	plastid	23.25	53.62
TraesCS4B01G311100.1	Wheat	golgi	24.35	25.24
TraesCS5B01G465000.1	Wheat	golgi	24.17	24.67
TraesCS7B01G038300.1	Wheat	golgi	23.43	24.33
TraesCS7B01G038100.1	Wheat	mitochondrion	21.03	23.22
TraesCS5B01G464800.1	Wheat	cytosol	11.25	21.03
TraesCS3B01G574300.1	Wheat	mitochondrion	16.79	16.55

Protein Annotations

Gene3D:2.102.10.10	MapMan:23.1.3.5.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G386400	EnsemblPlants:TraesCS6B01G386400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:+:661338251..661340087

Molecular Weight (calculated)

60071.8 Da

IEP (calculated)

8.990

GRAVY (calculated)

-0.291

Length

542 amino acids

Sequence
(BLAST)

001: MTPPPPPTTA LPRPSLLLAV SSAALKISSA ATSPARGERW QGVGVGRGRR RAVGRCWAAA VEEAGAQEDG VLLPKEGEGS EAAGRYDWRE EWYPLYLSKE
101: VPDDAALPLT VFDRQLVLYR DADGVLRCHE DRCPHRLAKL SEGQLVDGKL ECLYHGWQFD GQGKCVKIPQ LPEGAKIPRN ACARNYEVRD SQGVVWVWMS
201: PATPPDAKKL PWFEPYARPG FTDLSTVHEL PYDHSILLEN LMDPAHVPIS HDRTDWTAKR EDAQPLAFEV AERTARGFAG HWWRERAPHL RNLLRFEAPC
301: VLTNTLEFVD KDGKEQCFSA QFLCRPAGQG KSMLLVRFGS TARSPLLRVL PKWYFHQNAC KVFEQDMGFL SSQNEVLLRE KVPTKELYLN LRSSDTWVAE
401: YRRWMDRAGH GMPYYFGHST ISPPPVPAVV EQAPAGAAAG ISASFPAKGG FGTQHAPNPT NRYFRHVVHC KGCRDSVNRY TALKKAFVVL AAVAAAAAVL
501: AATRQWKAVL LGAAAVLAAA SYACGSVVSL ITTNFIRTHR RL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.