Factsheet for TraesCS6D01G336000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G386400.1	Wheat	plastid	98.16	98.16
TraesCS6A01G353700.1	Wheat	plastid	98.34	97.98
HORVU6Hr1G084510.1	Barley	plastid	94.83	90.33
EES05942	Sorghum	plastid	82.1	82.71
Zm00001d018358_P001	Maize	plastid	81.55	82.16
Os02t0792800-01	Rice	plastid	81.55	82.0
VIT_04s0008g07020.t01	Wine grape	plastid	64.21	63.97
KRH52304	Soybean	plastid	62.18	62.41
AT2G24820.1	Thale cress	plastid	61.81	62.15
CDY38515	Canola	plastid	61.99	62.11
Bra000547.1-P	Field mustard	plastid	61.99	62.11
CDX83228	Canola	plastid	61.99	62.11
CDY38513	Canola	plastid	61.99	62.11
GSMUA_Achr4P20520_001	Banana	plastid	57.38	61.22
Solyc12g096550.1.1	Tomato	plastid	60.33	59.89
PGSC0003DMT400075266	Potato	plastid	60.33	59.56
KRH61640	Soybean	plasma membrane, plastid	62.92	59.3
CDY38514	Canola	plastid	23.06	53.19
TraesCS5D01G466800.3	Wheat	mitochondrion, plasma membrane, plastid	24.17	24.58
TraesCS4D01G309000.1	Wheat	mitochondrion	23.99	24.53
TraesCS7D01G137200.1	Wheat	golgi	23.25	24.14
TraesCS5D01G466600.1	Wheat	mitochondrion, plasma membrane, plastid	21.59	22.85
TraesCS3D01G514100.1	Wheat	mitochondrion	16.24	16.0

Protein Annotations

Gene3D:2.102.10.10	MapMan:23.1.3.5.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010277	GO:GO:0016491	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	PFAM:PF00355	PFAM:PF08417	PFscan:PS51296	PANTHER:PTHR21266	PANTHER:PTHR21266:SF29
InterPro:PaO	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	SUPFAM:SSF50022	SUPFAM:SSF55961	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G336000	EnsemblPlants:TraesCS6D01G336000.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:437163517..437165596

Molecular Weight (calculated)

59905.6 Da

IEP (calculated)

8.887

GRAVY (calculated)

-0.248

Length

542 amino acids

Sequence
(BLAST)

001: MTPPPPTTAL PRPSLLLAVS SAALKISSAA ASPARGVRWQ GVGVGRGRSR AVGRCWAAAV EEAGAQEQDG VLLPQEGEGS EAAGRYDWRE EWYPLYLSKE
101: VPDDAALPLT VFDRQLVLYR DAAGVLRCHE DRCPHRLAKL SEGQLVDGKL ECLYHGWQFD GEGKCVKIPQ LPEGAKIPRN ACARNYEVRD SQGVVWVWMS
201: PATPPDAKKL PWFEPYARAG FTDLSTVHEL PYDHSILLEN LMDPAHVPIS HDRTDWTAKR EDAQPLAFEV AERTARGFAG HWWRERAPHL RNLLRFEAPC
301: VLTNTLEFVD KDGREQCFSA QFLCRPAGQG KSMLLVRFGS TARSPLLRVL PKWYFHQNAC KVFEQDMGFL SSQNEVLLRE KVPTKELYLN LRSSDTWVAE
401: YRRWMDRAGH GMPYYFGHST ISPPPVPAVV EQAPAGAAAG ISASFPAKGG FGTQHAPNPT SRYFRHVVHC KGCRDSVNRY TALKKAFVVL AAVAAAAAVL
501: AATRQWKAVL LGAAAVLAAA SYACGSVVSL ITTNFIRTHR RL

Best Arabidopsis Sequence Match ( AT2G24820.1 )
(BLAST)

001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Arabidopsis Description

TIC55Protein TIC 55, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SK50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.